RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LRRC6Q86X45 466 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 MPP5Q8N3R9 675 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 CCDC185Q8N715 623 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 DNAJB3Q8WWF6 145 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 DHRS4Q9BTZ2 278 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 CEP41Q9BYV8 373 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 SMG5Q9UPR3 1016 aaKnown RBP19.86■□□□□ 0.77
VIM-203ENST00000469543 C2orf71A6NGG8 1288 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 PYGBP11216 843 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 PTK7Q13308 1070 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 ACVR2BQ13705 512 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 CDHR3Q6ZTQ4 885 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 BANPQ8N9N5 519 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 SLC4A5Q9BY07 1137 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 TRIM6Q9C030 488 aaPredicted RBP19.86■□□□□ 0.77
VIM-203ENST00000469543 HAO1Q9UJM8 370 aa19.86■□□□□ 0.77
VIM-203ENST00000469543 CHUKO15111 745 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 CCNA1P78396 465 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 SOX4Q06945 474 aaPredicted RBP19.85■□□□□ 0.77
VIM-203ENST00000469543 ZBTB6Q15916 424 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 DUSP28Q4G0W2 176 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 ZNF449Q6P9G9 518 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 PPM1NQ8N819 430 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 SYT17Q9BSW7 474 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 PLXNA1Q9UIW2 1896 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 LAMA3Q16787 3333 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 APOL1O14791 398 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 CBX6O95503 412 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 ZBED1O96006 694 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 YWHAZP63104 245 aaKnown RBP19.85■□□□□ 0.77
VIM-203ENST00000469543 DGKDQ16760 1214 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 C9orf57Q5W0N0 161 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 USP50Q70EL3 339 aaPredicted RBP19.85■□□□□ 0.77
VIM-203ENST00000469543 UNC5BQ8IZJ1 945 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 KBTBD7Q8WVZ9 684 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 SNX27Q96L92 541 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 PGLYRP2Q96PD5 576 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 FAM111AQ96PZ2 611 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 PTPN18Q99952 460 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 TINF2Q9BSI4 451 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 SMYD2Q9NRG4 433 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 SLC5A4Q9NY91 659 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 STARD13Q9Y3M8 1113 aa19.85■□□□□ 0.77
VIM-203ENST00000469543 CYP2F1P24903 491 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 CRADDP78560 199 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 TFDP2Q14188 446 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 BOLA3Q53S33 107 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 SLC27A1Q6PCB7 646 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 TRMT10BQ6PF06 316 aaKnown RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 RFWD2Q8NHY2 731 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 SLC2A14Q8TDB8 520 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 CYTH2Q99418 400 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 HESX1Q9UBX0 185 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 TRIP12Q14669 1992 aaPredicted RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 RBM47A0AV96 593 aaKnown RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 CLDN5O00501 218 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 TOP3BO95985 862 aaKnown RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 ACAT1P24752 427 aaKnown RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 BMPR2Q13873 1038 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 SEPT7Q16181 437 aaKnown RBP19.84■□□□□ 0.77
VIM-203ENST00000469543 RNF43Q68DV7 783 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 FAM131BQ86XD5 332 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 MAP7D3Q8IWC1 876 aa19.84■□□□□ 0.77
VIM-203ENST00000469543 LAMA2P24043 3122 aaKnown RBP19.83■□□□□ 0.77
VIM-203ENST00000469543 BEST1O76090 585 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 MT-ND3P03897 115 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 AMPD1P23109 780 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 L1CAMP32004 1257 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 ACCSLQ4AC99 568 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 EMID1Q96A84 441 aaPredicted RBP19.83■□□□□ 0.77
VIM-203ENST00000469543 TTC17Q96AE7 1141 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 LRRC37BQ96QE4 947 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 FRMD8P1Q9BZ68 369 aaPredicted RBP19.83■□□□□ 0.77
VIM-203ENST00000469543 NRDE2Q9H7Z3 1164 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 MTMR10Q9NXD2 777 aa19.83■□□□□ 0.77
VIM-203ENST00000469543 PIN4Q9Y237 131 aaKnown RBP19.83■□□□□ 0.77
VIM-203ENST00000469543 SMIM28A0A1B0GU29 152 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 TREHO43280 583 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 SMIM10L2AP0DMW4 78 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 SMIM10L2BP0DMW5 78 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 KLHL38Q2WGJ6 581 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 ASRGL1Q7L266 308 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 VSIG1Q86XK7 387 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 TP53INP2Q8IXH6 220 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 ARRDC4Q8NCT1 418 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 UTP4Q969X6 686 aaKnown RBP19.83■□□□□ 0.76
VIM-203ENST00000469543 FAXDC2Q96IV6 333 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 LGMNQ99538 433 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 ZNF395Q9H8N7 513 aaPredicted RBP19.83■□□□□ 0.76
VIM-203ENST00000469543 SENP1Q9P0U3 644 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 SLC17A6Q9P2U8 582 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 MAD1L1Q9Y6D9 718 aa19.83■□□□□ 0.76
VIM-203ENST00000469543 MEIS3P2A8K0S8 358 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 LPXNO60711 386 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 C1QAP02745 245 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 GOT1P17174 413 aa19.82■□□□□ 0.76
VIM-203ENST00000469543 TKTP29401 623 aaKnown RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 GBP2P32456 591 aaPredicted RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 GNL1P36915 607 aaPredicted RBP19.82■□□□□ 0.76
VIM-203ENST00000469543 NDUFV1P49821 464 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms