RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 RSAD1Q9HA92 442 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 CHST11Q9NPF2 352 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 ECHDC1Q9NTX5 307 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 FAM105AQ9NUU6 356 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 COPG2Q9UBF2 871 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 PCDHGA7Q9Y5G6 932 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 SLCO1B1Q9Y6L6 691 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 TMEM131Q92545 1883 aa5.53□□□□□ -1.52
HMGB1-207ENST00000468384 A0A1W2PNR3 127 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 A0A1W2PP55 124 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 METTL12A8MUP2 240 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 FAM171A2A8MVW0 826 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 INAFM1C9JVW0 142 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 PRPF3O43395 683 aaKnown RBP5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CBX6O95503 412 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 HSPA5P11021 654 aaKnown RBP5.52□□□□□ -1.53
HMGB1-207ENST00000468384 EPB42P16452 691 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CD33P20138 364 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CES1P23141 567 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CCND2P30279 289 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 ELF1P32519 619 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 GRIA4P48058 902 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 PPP2R2BQ00005 443 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 DEFA6Q01524 100 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 GRIK3Q13003 919 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 SHBQ15464 509 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 GNPTABQ3T906 1256 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 PRAMEF14Q5SWL7 426 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 LAYNQ6UX15 382 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CCDC146Q8IYE0 955 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 ELMOD1Q8N336 334 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 LENG9Q96B70 501 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 GRAMD1AQ96CP6 724 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 C14orf79Q96F83 325 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 SEC16BQ96JE7 1060 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 MEGF10Q96KG7 1140 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CEP63Q96MT8 703 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 GPR174Q9BXC1 333 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 ECT2Q9H8V3 914 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 CEP72Q9P209 647 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 ARMCX1Q9P291 453 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 SEL1LQ9UBV2 794 aa5.52□□□□□ -1.53
HMGB1-207ENST00000468384 SF3B1O75533 1304 aaKnown RBP eCLIP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 A0A1B0GTH6 734 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 MINDY4BA8MYZ0 360 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 FBXO24O75426 580 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TADA2AO75478 443 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 REC8O95072 547 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 F9P00740 461 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ALBP02768 609 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 CD6P30203 668 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 SLC6A11P48066 632 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 NASPP49321 788 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 NLRP11P59045 1033 aaKnown RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TLE4Q04727 773 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TCEAL1Q15170 157 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 PRR30Q53SZ7 412 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 VWA2Q5GFL6 755 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 FAM171A1Q5VUB5 890 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 HMBOX1Q6NT76 420 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TCTN3Q6NUS6 607 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 CTR9Q6PD62 1173 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 JAMLQ86YT9 394 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 CKAP2LQ8IYA6 745 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 CPA6Q8N4T0 437 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 WDR36Q8NI36 951 aaKnown RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TOE1Q96GM8 510 aaKnown RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 EAF1Q96JC9 268 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ACAP3Q96P50 834 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 PCYT2Q99447 389 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ELF4Q99607 663 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 SENP7Q9BQF6 1050 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 SMG9Q9H0W8 520 aaKnown RBP5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ARMT1Q9H993 441 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ZDHHC4Q9NPG8 344 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 INSL5Q9Y5Q6 135 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 CDY1Q9Y6F8 540 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 TRRAPQ9Y4A5 3859 aa5.51□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF106Q9H2Y7 1883 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 AKAP6Q13023 2319 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ELOA3CA0A087WX78 387 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 A0A0A0MRY4 1105 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ELOA3DA6NLF2 546 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 KCNN4O15554 427 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 FIBPO43427 364 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 CNTN5O94779 1100 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 WNT11O96014 354 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 DARSP14868 501 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 EIF4A3P38919 411 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 RAB27AP51159 221 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ADAM8P78325 824 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 CALD1Q05682 793 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 PDGFRLQ15198 375 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ELOA3BQ3SY89 546 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 CCDC158Q5M9N0 1113 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 EMC10Q5UCC4 262 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 TTC39BQ5VTQ0 682 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 STOX1Q6ZVD7 989 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 TMPRSS9Q7Z410 1059 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 RELL1Q8IUW5 271 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms