RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CYP3A43Q9HB55 503 aa16.25■□□□□ 0.19
SKA3-204ENST00000462482 CSNK1G1Q9HCP0 422 aa16.25■□□□□ 0.19
SKA3-204ENST00000462482 DNAJC17Q9NVM6 304 aaKnown RBP16.25■□□□□ 0.19
SKA3-204ENST00000462482 PCDHA5Q9Y5H7 936 aa16.25■□□□□ 0.19
SKA3-204ENST00000462482 ACACBO00763 2458 aa16.25■□□□□ 0.19
SKA3-204ENST00000462482 EPG5Q9HCE0 2579 aa16.25■□□□□ 0.19
SKA3-204ENST00000462482 PATE3B3GLJ2 98 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 NEDD8-MDP1E9PL57 170 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 ASS1P00966 412 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 CEACAM1P13688 526 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 PFKFB1P16118 471 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 CSRP1P21291 193 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 CMA1P23946 247 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 RPL13P26373 211 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 HOXD12P35452 270 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 VAMP7P51809 220 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 IRX4P78413 519 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 RPL6Q02878 288 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 ZNF252P-AS1Q0IIN9 211 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 INTS8Q75QN2 995 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 CHPFQ8IZ52 775 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 PHTF2Q8N3S3 785 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 C12orf29Q8N999 325 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 CEP76Q8TAP6 659 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 CYFIP2Q96F07 1278 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 HNRNPABQ99729 332 aaKnown RBP16.24■□□□□ 0.19
SKA3-204ENST00000462482 ZDHHC4Q9NPG8 344 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 SCML2Q9UQR0 700 aa16.24■□□□□ 0.19
SKA3-204ENST00000462482 TPRP12270 2363 aaKnown RBP16.23■□□□□ 0.19
SKA3-204ENST00000462482 A0A1B0GVL5 298 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 MAPK13O15264 365 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 ADAM23O75077 832 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 ZNF217O75362 1048 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 BEST1O76090 585 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 CFIP05156 583 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 RALAP11233 206 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 ACO1P21399 889 aaKnown RBP16.23■□□□□ 0.19
SKA3-204ENST00000462482 NR2F2P24468 414 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 ASPAP45381 313 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 PLA2G4AP47712 749 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 PSEN1P49768 467 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 FOXC1Q12948 553 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 MAP7D1Q3KQU3 841 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 C10orf120Q5SQS8 335 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 SPOPLQ6IQ16 392 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 TPGS1Q6ZTW0 290 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 SPRYD3Q8NCJ5 442 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 ZMIZ2Q8NF64 920 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 CCDC34Q96HJ3 373 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 SPATA32Q96LK8 384 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 CDK5RAP1Q96SZ6 601 aaKnown RBP16.23■□□□□ 0.19
SKA3-204ENST00000462482 KLF16Q9BXK1 252 aaPredicted RBP16.23■□□□□ 0.19
SKA3-204ENST00000462482 PNPLA8Q9NP80 782 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 CYLDQ9NQC7 956 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 HMGXB4Q9UGU5 601 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 DNMT3LQ9UJW3 386 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 TRAF3IP3Q9Y228 551 aa16.23■□□□□ 0.19
SKA3-204ENST00000462482 CYP26A1O43174 497 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 TBX18O95935 607 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 RARGP13631 454 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 TYRP14679 529 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 CD58P19256 250 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 WASP42768 502 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 PTGER3P43115 390 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 SYKP43405 635 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 MAPK8P45983 427 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 KRT85P78386 507 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 GFPT1Q06210 699 aaPredicted RBP16.22■□□□□ 0.19
SKA3-204ENST00000462482 KLHDC10Q6PID8 442 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 CLEC20AQ6ZU45 233 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 FAM186BQ8IYM0 893 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 HDDC3Q8N4P3 179 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 TTC39CQ8N584 583 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 NIF3L1Q9GZT8 377 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 NAGPAQ9UK23 515 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 ZNF510Q9Y2H8 683 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 STARD13Q9Y3M8 1113 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 OBSL1O75147 1896 aa16.22■□□□□ 0.19
SKA3-204ENST00000462482 ZNF638Q14966 1978 aaKnown RBP16.22■□□□□ 0.19
SKA3-204ENST00000462482 CDX4O14627 284 aaPredicted RBP16.21■□□□□ 0.19
SKA3-204ENST00000462482 GIPC1O14908 333 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 CACNG3O60359 315 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 ENGP17813 658 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 GABRG2P18507 467 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 RDXP35241 583 aaKnown RBP16.21■□□□□ 0.19
SKA3-204ENST00000462482 PSMC2P35998 433 aaKnown RBP16.21■□□□□ 0.19
SKA3-204ENST00000462482 GCLMP48507 274 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 DGKGP49619 791 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 SLC8A3P57103 927 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 INCA1Q0VD86 236 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 E2F5Q15329 346 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 DUOXA1Q1HG43 343 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 SLC23A3Q6PIS1 610 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 MMRN2Q9H8L6 949 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 MARK1Q9P0L2 795 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 CALCOCO1Q9P1Z2 691 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 MBD1Q9UIS9 605 aaPredicted RBP16.21■□□□□ 0.19
SKA3-204ENST00000462482 SLC6A14Q9UN76 642 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 DENND4CQ5VZ89 1909 aa16.21■□□□□ 0.19
SKA3-204ENST00000462482 ATXN2Q99700 1313 aaKnown RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms