RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	KXD1	Q9BQD3	176 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	NUP58	Q9BVL2	599 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	LHX5	Q9H2C1	402 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	ACP6	Q9NPH0	428 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	CNGB3	Q9NQW8	809 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	IFNK	Q9P0W0	207 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	LCMT1	Q9UIC8	334 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	DUSP12	Q9UNI6	340 aa		11.64	□□□□□ -0.55
APTX-209	ENST00000460940	SART1	O43290	800 aa	Known RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	FBXO21	O94952	628 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PRAMEF12	O95522	483 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	LSM8	O95777	96 aa	Known RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ZBED1	O96006	694 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	CP	P00450	1065 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	CCDC172	P0C7W6	258 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	SRF	P11831	508 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	TCF3	P15923	654 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	OAS2	P29728	719 aa	Known RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PBX1	P40424	430 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PM20D1	Q6GTS8	502 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	TANGO2	Q6ICL3	276 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ZNF276	Q8N554	614 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	KIAA1958	Q8N8K9	716 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	EPS8L1	Q8TE68	723 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	RSAD2	Q8WXG1	361 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	IRGQ	Q8WZA9	623 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	SLC2A4RG	Q9NR83	387 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	TDP1	Q9NUW8	608 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	CLIC5	Q9NZA1	410 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ARHGAP26	Q9UNA1	814 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	DENND4C	Q5VZ89	1909 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ZNF638	Q14966	1978 aa	Known RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	C2orf78	A6NCI8	922 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	HEPACAM2	A8MVW5	462 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PI4K2B	G5E9Z4	385 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	GFPT2	O94808	682 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ABL1	P00519	1130 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PSMC3	P17980	439 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	HDC	P19113	662 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ACTN2	P35609	894 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	SNX16	P57768	344 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	SLC7A9	P82251	487 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ZXDA	P98168	799 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	PMF1	Q6P1K2	205 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	KLHDC10	Q6PID8	442 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	MFSD6L	Q8IWD5	586 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	USP13	Q92995	863 aa	Predicted RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	SLC4A5	Q9BY07	1137 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ULBP1	Q9BZM6	244 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	TTYH3	Q9C0H2	523 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	IMPACT	Q9P2X3	320 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.63	□□□□□ -0.55
APTX-209	ENST00000460940	NAGPA	Q9UK23	515 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	ITIH6	Q6UXX5	1313 aa		11.63	□□□□□ -0.55
APTX-209	ENST00000460940	MYO16	Q9Y6X6	1858 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940		A0A1W2PQH9	124 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940		A0A1W2PQJ5	194 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	POLR3G	O15318	223 aa	Predicted RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	TLR5	O60602	858 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	RALA	P11233	206 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	FER	P16591	822 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	CDH5	P33151	784 aa	Predicted RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	VIPR2	P41587	438 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	RGS7	P49802	495 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	PFKP	Q01813	784 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	FCHO2	Q0JRZ9	810 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	USP4	Q13107	963 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	PDCL	Q13371	301 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	VIT	Q6UXI7	678 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	TRIM72	Q6ZMU5	477 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	NOP9	Q86U38	636 aa	Known RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	REXO1L1P	Q8IX06	675 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	YAF2	Q8IY57	180 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	ARL14EP	Q8N8R7	260 aa	Predicted RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	TMEM35B	Q8NCS4	154 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	DDX1	Q92499	740 aa	Known RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	BAP1	Q92560	729 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	EDA	Q92838	391 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	TRIM62	Q9BVG3	475 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	XPO4	Q9C0E2	1151 aa	Known RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	NACA2	Q9H009	215 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	NOCT	Q9UK39	431 aa	Known RBP	11.62	□□□□□ -0.55
APTX-209	ENST00000460940	ANAPC1	Q9H1A4	1944 aa		11.62	□□□□□ -0.55
APTX-209	ENST00000460940	CCP110	O43303	1012 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	KIF1C	O43896	1103 aa	Known RBP	11.61	□□□□□ -0.55
APTX-209	ENST00000460940	LCP1	P13796	627 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	GYS2	P54840	703 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	DAOA	P59103	153 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	YWHAG	P61981	247 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
APTX-209	ENST00000460940	CDR2	Q01850	454 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	SIGLEC14	Q08ET2	396 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	CCDC91	Q7Z6B0	441 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	SCD5	Q86SK9	330 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	TMEM110	Q86TL2	294 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	PASD1	Q8IV76	773 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	MSANTD4	Q8NCY6	345 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	BPIFB1	Q8TDL5	484 aa		11.61	□□□□□ -0.55
APTX-209	ENST00000460940	UBXN4	Q92575	508 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms