RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PAEPP09466 180 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 PLA2G4AP47712 749 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 BST2Q10589 180 aaKnown RBP22.32■■□□□ 1.16
HMGB3-205ENST00000455596 C10orf120Q5SQS8 335 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 TMEM270Q6UE05 265 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 PRR23BQ6ZRT6 265 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 SYT13Q7L8C5 426 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 ARHGAP18Q8N392 663 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 DCLK2Q8N568 766 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 CAMKK1Q8N5S9 505 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 PNKPQ96T60 521 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 SPHK2Q9NRA0 654 aa22.32■■□□□ 1.16
HMGB3-205ENST00000455596 RIF1Q5UIP0 2472 aaKnown RBP22.32■■□□□ 1.16
HMGB3-205ENST00000455596 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.31■■□□□ 1.16
HMGB3-205ENST00000455596 K7EQS6 105 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 MDM4O15151 490 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 HRO43593 1189 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 APODP05090 189 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 HOXC13P31276 330 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 SLC6A11P48066 632 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 PDE4CQ08493 712 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 SIM2Q14190 667 aaPredicted RBP22.31■■□□□ 1.16
HMGB3-205ENST00000455596 BTBD8Q5XKL5 378 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 C12orf40Q86WS4 652 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 EHBP1Q8NDI1 1231 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 GMEB2Q9UKD1 530 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 PTPRZ1P23471 2315 aaPredicted RBP22.31■■□□□ 1.16
HMGB3-205ENST00000455596 SPAG17Q6Q759 2223 aa22.31■■□□□ 1.16
HMGB3-205ENST00000455596 CCDC163A0A0D9SF12 145 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 HOXC11O43248 304 aaPredicted RBP22.3■■□□□ 1.16
HMGB3-205ENST00000455596 TKTL1P51854 596 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 SEC13P55735 322 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 RRAGAQ7L523 313 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 KIAA2013Q8IYS2 634 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 USP33Q8TEY7 942 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 KAT5Q92993 513 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 CLSTN2Q9H4D0 955 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 LRRC4Q9HBW1 653 aa22.3■■□□□ 1.16
HMGB3-205ENST00000455596 DMDP11532 3685 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 TULP2O00295 520 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 O00370 1275 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 GREM1O60565 184 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 KAT7O95251 611 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 SETSIPP0DME0 302 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 YWHAGP61981 247 aaKnown RBP eCLIP22.29■■□□□ 1.16
HMGB3-205ENST00000455596 GCNT1Q02742 428 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 SRSF5Q13243 272 aaKnown RBP22.29■■□□□ 1.16
HMGB3-205ENST00000455596 DMC1Q14565 340 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 LPAL2Q16609 132 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 ANO4Q32M45 955 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 LAIR1Q6GTX8 287 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 MIB1Q86YT6 1006 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 CREBRFQ8IUR6 639 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 ARHGEF19Q8IW93 802 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 MLKLQ8NB16 471 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 UBA3Q8TBC4 463 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 HHIPQ96QV1 700 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 ARHGEF4Q9NR80 690 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 POLR3BQ9NW08 1133 aaPredicted RBP22.29■■□□□ 1.16
HMGB3-205ENST00000455596 RASAL2Q9UJF2 1139 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 OTOGLQ3ZCN5 2332 aa22.29■■□□□ 1.16
HMGB3-205ENST00000455596 MYO18AQ92614 2054 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 RNF225M0QZC1 329 aaPredicted RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 ZBED1O96006 694 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 GRIA2P42262 883 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 PXNP49023 591 aaPredicted RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 MRPS21P82921 87 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 KDSRQ06136 332 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 STILQ15468 1287 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 PREPLQ4J6C6 727 aaPredicted RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 C2orf27AQ580R0 203 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 PM20D1Q6GTS8 502 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 LCLAT1Q6UWP7 414 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 CEP68Q76N32 757 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 RSRC2Q7L4I2 434 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 TMEM25Q86YD3 366 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 GPR161Q8N6U8 529 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 NAT16Q8N8M0 369 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 RBBP8NLQ8NC74 664 aaPredicted RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 TFAP2BQ92481 460 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 CNOT6LQ96LI5 555 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 ULBP1Q9BZM6 244 aa22.28■■□□□ 1.16
HMGB3-205ENST00000455596 INTS2Q9H0H0 1204 aaKnown RBP22.28■■□□□ 1.16
HMGB3-205ENST00000455596 A0A0A0MRY4 1105 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 STC2O76061 302 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 COG7P83436 770 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 ADIGQ0VDE8 80 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 EFEMP1Q12805 493 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 CNGA2Q16280 664 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 PKDCCQ504Y2 493 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 ETFBKMTQ8IXQ9 262 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 SIX6OS1Q8N1H7 587 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 KCTD13Q8WZ19 329 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 IPO9Q96P70 1041 aaKnown RBP22.27■■□□□ 1.16
HMGB3-205ENST00000455596 STRIP2Q9ULQ0 834 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.27■■□□□ 1.16
HMGB3-205ENST00000455596 ZNF510Q9Y2H8 683 aa22.27■■□□□ 1.16
HMGB3-205ENST00000455596 TULP3O75386 442 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 APBB3O95704 486 aa22.26■■□□□ 1.15
HMGB3-205ENST00000455596 BRD2P25440 801 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms