RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 CNGB3Q9NQW8 809 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 PRDM6Q9NQX0 595 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 TLR8Q9NR97 1041 aaKnown RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 TMEM51Q9NW97 253 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 AIPL1Q9NZN9 384 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 EPS15L1Q9UBC2 864 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 MAGED2Q9UNF1 606 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-205ENST00000453441 SCML2Q9UQR0 700 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 USP3Q9Y6I4 520 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 DOCK8Q8NF50 2099 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 NOTCH4Q99466 2003 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 DENND4CQ5VZ89 1909 aa9.17□□□□□ -0.94
COL28A1-205ENST00000453441 REV3LO60673 3130 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 DOCK6Q96HP0 2047 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 LRRC53A6NM62 1247 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 GFPT2O94808 682 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 F11P03951 625 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 BMP1P13497 986 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 IL9P15248 144 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 TAF10Q12962 218 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 PM20D1Q6GTS8 502 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 KLHDC10Q6PID8 442 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 GET4Q7L5D6 327 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-205ENST00000453441 VPS36Q86VN1 386 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 MON1AQ86VX9 555 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 CNGA4Q8IV77 575 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 NPAS3Q8IXF0 933 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 KIAA1958Q8N8K9 716 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 SHKBP1Q8TBC3 707 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 DDX1Q92499 740 aaKnown RBP9.16□□□□□ -0.94
COL28A1-205ENST00000453441 GOLGA1Q92805 767 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 FGF13Q92913 245 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 FBXO32Q969P5 355 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 ITPKCQ96DU7 683 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 ZSWIM1Q9BR11 485 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 ATXN3LQ9H3M9 355 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 TASP1Q9H6P5 420 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 KIF9Q9HAQ2 790 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF334Q9HCZ1 680 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-205ENST00000453441 TMEM30AQ9NV96 361 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 ZNHIT6Q9NWK9 470 aaKnown RBP9.16□□□□□ -0.94
COL28A1-205ENST00000453441 HCFC1R1Q9NWW0 138 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 OBP2AQ9NY56 170 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 CLIC5Q9NZA1 410 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 IGSF9Q9P2J2 1179 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 NOCTQ9UK39 431 aaKnown RBP9.16□□□□□ -0.94
COL28A1-205ENST00000453441 COL6A3P12111 3177 aa9.16□□□□□ -0.94
COL28A1-205ENST00000453441 OBSL1O75147 1896 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 PRUNE2Q8WUY3 3088 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 TRAV19A0A0A6YYK7 116 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 A0A1W2PRU2 124 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF840PA6NDX5 716 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GOLGA6L6A8MZA4 724 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 LOC730098B7Z3J9 87 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 BEST1O76090 585 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZBED1O96006 694 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GYPCP04921 128 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SERPING1P05155 500 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GLI1P08151 1106 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 FBXO45P0C2W1 286 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZDHHC11BP0C7U3 371 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 RALAP11233 206 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 LAMP2P13473 410 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 CDC25BP30305 580 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 HNRNPH3P31942 346 aaKnown RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GBP2P32456 591 aaPredicted RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SCNN1AP37088 669 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 KCNQ1P51787 676 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF75DP51815 510 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 TKTL1P51854 596 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZP2Q05996 745 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 NR1H3Q13133 447 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 PDCLQ13371 301 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 MTMR3Q13615 1198 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ZNF268Q14587 947 aaPredicted RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SLC5A9Q2M3M2 681 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SDHAF4Q5VUM1 108 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 DENND1BQ6P3S1 775 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GAREM2Q75VX8 874 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 BEND5Q7L4P6 421 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 TRIM46Q7Z4K8 759 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 TMEM110Q86TL2 294 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 NOP9Q86U38 636 aaKnown RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 DDX42Q86XP3 938 aaKnown RBP eCLIP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 C1orf131Q8NDD1 294 aaKnown RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 OR8K1Q8NGG5 319 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 UBA3Q8TBC4 463 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 GPR152Q8TDT2 470 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SMARCD2Q92925 531 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 AGPAT1Q99943 283 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SLITRK6Q9H5Y7 841 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 SYNCQ9H7C4 482 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 TRPV4Q9HBA0 871 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 OLA1Q9NTK5 396 aaKnown RBP9.15□□□□□ -0.94
COL28A1-205ENST00000453441 PGPEP1Q9NXJ5 209 aa9.15□□□□□ -0.94
COL28A1-205ENST00000453441 NUP210Q8TEM1 1887 aaPredicted RBP9.15□□□□□ -0.95
COL28A1-205ENST00000453441 MYO16Q9Y6X6 1858 aa9.15□□□□□ -0.95
COL28A1-205ENST00000453441 SPTBN5Q9NRC6 3674 aaKnown RBP9.15□□□□□ -0.95
COL28A1-205ENST00000453441 ANAPC1Q9H1A4 1944 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms