RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 OPRD1P41143 372 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 EIF2DP41214 584 aaKnown RBP16.31■□□□□ 0.2
LIMS1-210ENST00000449684 TKTL1P51854 596 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 DMWDQ09019 674 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 LPAL2Q16609 132 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 C2orf27AQ580R0 203 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 RRAGAQ7L523 313 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 BBS7Q8IWZ6 715 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 KIAA2013Q8IYS2 634 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 MLKLQ8NB16 471 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 UBA3Q8TBC4 463 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 KLF16Q9BXK1 252 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-210ENST00000449684 SPHK2Q9NRA0 654 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 C2orf42Q9NWW7 574 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 OSER1Q9NX31 292 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 CLIC5Q9NZA1 410 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 RASAL2Q9UJF2 1139 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 USP3Q9Y6I4 520 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 EP300Q09472 2414 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-210ENST00000449684 WDR87Q6ZQQ6 2873 aa16.31■□□□□ 0.2
LIMS1-210ENST00000449684 XPO1O14980 1071 aaKnown RBP16.3■□□□□ 0.2
LIMS1-210ENST00000449684 MDM4O15151 490 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 ZBED1O96006 694 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 HOXA6P31267 233 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 SLC6A11P48066 632 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 PXNP49023 591 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-210ENST00000449684 MARSP56192 900 aaKnown RBP16.3■□□□□ 0.2
LIMS1-210ENST00000449684 YWHAGP61981 247 aaKnown RBP eCLIP16.3■□□□□ 0.2
LIMS1-210ENST00000449684 COG7P83436 770 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 KDSRQ06136 332 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 PDE4CQ08493 712 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 EFEMP1Q12805 493 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 KLHDC10Q6PID8 442 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 HTR3DQ70Z44 454 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 SCD5Q86SK9 330 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 WDR5BQ86VZ2 330 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 TTC30AQ86WT1 665 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 SIX6OS1Q8N1H7 587 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 DCLK2Q8N568 766 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 CAMKK1Q8N5S9 505 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 NAT16Q8N8M0 369 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 CLSTN2Q9H4D0 955 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 ARHGEF4Q9NR80 690 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 DEC1Q9P2X7 70 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 DACH1Q9UI36 760 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 STRIP2Q9ULQ0 834 aa16.3■□□□□ 0.2
LIMS1-210ENST00000449684 TBC1D3BA6NDS4 549 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 HRO43593 1189 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 KAT7O95251 611 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 HMBSP08397 361 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 SETSIPP0DME0 302 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 KRT5P13647 590 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 GRIA2P42262 883 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 MTIF2P46199 727 aaKnown RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 DMC1Q14565 340 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 STILQ15468 1287 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 RAB41Q5JT25 222 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 TPGS1Q6ZTW0 290 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 SYT13Q7L8C5 426 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 GPR161Q8N6U8 529 aaKnown RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 RBBP8NLQ8NC74 664 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 RNF139Q8WU17 664 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 CNOT6LQ96LI5 555 aaKnown RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 XPO6Q96QU8 1125 aaKnown RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 HHIPQ96QV1 700 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 ULBP1Q9BZM6 244 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 INTS2Q9H0H0 1204 aaKnown RBP16.29■□□□□ 0.2
LIMS1-210ENST00000449684 NUP62CLQ9H1M0 184 aa16.29■□□□□ 0.2
LIMS1-210ENST00000449684 NEDD8-MDP1E9PL57 170 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 K7EQS6 105 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 O00370 1275 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 MRPS21P82921 87 aaKnown RBP16.28■□□□□ 0.2
LIMS1-210ENST00000449684 GCNT1Q02742 428 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 ADIGQ0VDE8 80 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 SRSF5Q13243 272 aaKnown RBP16.28■□□□□ 0.2
LIMS1-210ENST00000449684 GAB4Q2WGN9 574 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 LAIR1Q6GTX8 287 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 TMEM25Q86YD3 366 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 ARHGEF19Q8IW93 802 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 ZNF276Q8N554 614 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 UBR7Q8N806 425 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 TSTD1Q8NFU3 115 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 USP33Q8TEY7 942 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 EZH1Q92800 747 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-210ENST00000449684 KAT5Q92993 513 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 WBP2Q969T9 261 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 GBP4Q96PP9 640 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 BBS2Q9BXC9 721 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 DCLK3Q9C098 648 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 UBE2TQ9NPD8 197 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-210ENST00000449684 OLA1Q9NTK5 396 aaKnown RBP16.28■□□□□ 0.2
LIMS1-210ENST00000449684 WDR35Q9P2L0 1181 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 ZNF510Q9Y2H8 683 aa16.28■□□□□ 0.2
LIMS1-210ENST00000449684 CCDC163A0A0D9SF12 145 aa16.27■□□□□ 0.2
LIMS1-210ENST00000449684 SLC12A8A0AV02 714 aa16.27■□□□□ 0.2
LIMS1-210ENST00000449684 M0QYV0 167 aa16.27■□□□□ 0.2
LIMS1-210ENST00000449684 TULP2O00295 520 aa16.27■□□□□ 0.2
LIMS1-210ENST00000449684 AXIN1O15169 862 aa16.27■□□□□ 0.2
LIMS1-210ENST00000449684 HOXC11O43248 304 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms