RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PHTF2Q8N3S3 785 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 FRMD1Q8N878 549 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 CCDC150Q8NCX0 1101 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 DEFB124Q8NES8 71 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 TMC2Q8TDI7 906 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 CCDC47Q96A33 483 aaKnown RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 ZFRQ96KR1 1074 aaKnown RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SMOQ99835 787 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 GTPBP2Q9BX10 602 aaKnown RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 GZF1Q9H116 711 aaPredicted RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 FAM124BQ9H5Z6 455 aaPredicted RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 TMEM74BQ9NUR3 256 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 DMAC2Q9NW81 257 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 MBD1Q9UIS9 605 aaPredicted RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 PCDHA7Q9UN72 937 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 ZFHX4Q86UP3 3567 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 UPK3BL1B0FP48 263 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 UPK3BL2E5RIL1 263 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 NEDD8-MDP1E9PL57 170 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 H0Y626 953 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 GFRA2O00451 464 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 CALUO43852 315 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 NDUFS2O75306 463 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 TRIM16O95361 564 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 TBX18O95935 607 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 MYL1P05976 194 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ZSCAN22P10073 491 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 TYRP14679 529 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ITPKAP23677 461 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 CASP1P29466 404 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 PSEN1P49768 467 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 NDST1P52848 882 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF33AQ06730 810 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 FOXD4L6Q3SYB3 417 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ZACNQ401N2 412 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 FOXD4L5Q5VV16 416 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 RESP18Q5W5W9 173 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 KLHDC10Q6PID8 442 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 FOXD4L3Q6VB84 417 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 SV2AQ7L0J3 742 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 KDF1Q8NAX2 398 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 FOXD4L4Q8WXT5 416 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 CYFIP2Q96F07 1278 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 KLF16Q9BXK1 252 aaPredicted RBP14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ZDHHC4Q9NPG8 344 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 USP25Q9UHP3 1055 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 DNMT3LQ9UJW3 386 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 SCML2Q9UQR0 700 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF510Q9Y2H8 683 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 PCDHA5Q9Y5H7 936 aa14.03□□□□□ -0.16
HMGB3-204ENST00000448905 SPAG17Q6Q759 2223 aa14.02□□□□□ -0.16
HMGB3-204ENST00000448905 C1QTNF9BB2RNN3 333 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 OPHN1O60890 802 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 VNN1O95497 513 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 NR3C1P04150 777 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 C1QTNF9P0C862 333 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 RALAP11233 206 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CCDC130P13994 396 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 GNSP15586 552 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 GABRG2P18507 467 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 ACO1P21399 889 aaKnown RBP14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CHKAP35790 457 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 WASP42768 502 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 DGKGP49619 791 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 ZNF132P52740 706 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 STK4Q13043 487 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CEP135Q66GS9 1140 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 TPGS1Q6ZTW0 290 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 RGL4Q8IZJ4 473 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 C12orf29Q8N999 325 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 PLEKHO2Q8TD55 490 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 FOXJ1Q92949 421 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CDK5RAP1Q96SZ6 601 aaKnown RBP14.02□□□□□ -0.17
HMGB3-204ENST00000448905 HNRNPABQ99729 332 aaKnown RBP14.02□□□□□ -0.17
HMGB3-204ENST00000448905 SCNM1Q9BWG6 230 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 NT5C1AQ9BXI3 368 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 ADAM33Q9BZ11 813 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CYP3A43Q9HB55 503 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 PNPLA8Q9NP80 782 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CYLDQ9NQC7 956 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CALCOCO1Q9P1Z2 691 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 SUSD2Q9UGT4 822 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 ZMIZ1Q9ULJ6 1067 aa14.02□□□□□ -0.17
HMGB3-204ENST00000448905 CFAP47Q6ZTR5 3102 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 LAMA1P25391 3075 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 A0A1W2PQD8 194 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 A0A1W2PQF6 199 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 ARHGAP33O14559 1287 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 NPC1O15118 1278 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 CACNG3O60359 315 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 BEST1O76090 585 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 ASS1P00966 412 aaKnown RBP14.01□□□□□ -0.17
HMGB3-204ENST00000448905 RARGP13631 454 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 KRT13P13646 458 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 RPL13P26373 211 aaKnown RBP14.01□□□□□ -0.17
HMGB3-204ENST00000448905 ADORA2BP29275 332 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 PIK3CAP42336 1068 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 VAMP7P51809 220 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 DLG4P78352 724 aa14.01□□□□□ -0.17
HMGB3-204ENST00000448905 SIM1P81133 766 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms