RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CDH6P55285 790 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 INHBEP58166 350 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 YWHAZP63104 245 aaKnown RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 TTLL4Q14679 1199 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 FAM102AQ5T9C2 384 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 ZC3H18Q86VM9 953 aaKnown RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 SLC26A11Q86WA9 606 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 RTP4Q96DX8 246 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 PRR11Q96HE9 360 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 TMEM176AQ96HP8 235 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 CNPY3Q9BT09 278 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 FRMD8Q9BZ67 464 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 RPF1Q9H9Y2 349 aaKnown RBP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 PAK5Q9P286 719 aa17.05■□□□□ 0.32
CLCNKA-203ENST00000439316 H0Y3Z8 333 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 ATP6V1C1P21283 382 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TTC39BQ5VTQ0 682 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TRNP1Q6NT89 227 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 ZNF467Q7Z7K2 595 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TRIM50Q86XT4 487 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TMEM192Q8IY95 271 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 CXorf38Q8TB03 319 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 FAF2Q96CS3 445 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 ZIC5Q96T25 663 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 USP29Q9HBJ7 922 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 FBXO6Q9NRD1 293 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 ZNF180Q9UJW8 692 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 C2CD4BA6NLJ0 364 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 NOP56O00567 594 aaKnown RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 GSC2O15499 205 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 HMGCRP04035 888 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TAPT1Q6NXT6 567 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 DSTYKQ6XUX3 929 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 PRPF39Q86UA1 669 aaKnown RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 CDR2LQ86X02 465 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TMEM130Q8N3G9 435 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 MAML3Q96JK9 1138 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 RNF157Q96PX1 679 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 GPR20Q99678 358 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 VRTNQ9H8Y1 702 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 CYP3A43Q9HB55 503 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 POPDC2Q9HBU9 364 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 TNFSF13BQ9Y275 285 aa17.04■□□□□ 0.32
CLCNKA-203ENST00000439316 A6NHS1 94 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 TMEM88BA6NKF7 163 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 H7C0C1 242 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 COPEO14579 308 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 AVILO75366 819 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 SNAI1O95863 264 aaPredicted RBP17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 VDRP11473 427 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 ACADSP16219 412 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 GCKP35557 465 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 CCNFP41002 786 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 ATP5OP48047 213 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 ZBTB16Q05516 673 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 MBTD1Q05BQ5 628 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 KHDC1Q4VXA5 237 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 SH3PXD2AQ5TCZ1 1133 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 CDHR3Q6ZTQ4 885 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 CFAP36Q96G28 342 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 SPATA33Q96N06 139 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 SRPK1Q96SB4 655 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 FAM167BQ9BTA0 163 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 MMADHCQ9H3L0 296 aaPredicted RBP17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 RAB6BQ9NRW1 208 aa17.03■□□□□ 0.32
CLCNKA-203ENST00000439316 SLC15A5A6NIM6 579 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 TRIM49D1C9J1S8 452 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 INO80B-WBP1J3KQ70 363 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 NEFHP12036 1026 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 PRKCHP24723 683 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 MAGEA6P43360 314 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 RAB6CQ53S08 254 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 GJC2Q5T442 439 aaPredicted RBP17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 SYCP2LQ5T4T6 812 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 CAPRIN2Q6IMN6 1127 aaKnown RBP17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 C17orf99Q6UX52 265 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 MAMDC4Q6UXC1 1216 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 RINLQ6ZS11 566 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 PLPPR4Q7Z2D5 763 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 NPLOC4Q8TAT6 608 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 MICAL1Q8TDZ2 1067 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 RXFP2Q8WXD0 754 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 OXNAD1Q96HP4 312 aaPredicted RBP17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 NLRP4Q96MN2 994 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 OSBPL1AQ9BXW6 950 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 INO80BQ9C086 356 aaPredicted RBP17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 KATNBL1Q9H079 304 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 RAB6CQ9H0N0 254 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 PLAC1Q9HBJ0 212 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 VTA1Q9NP79 307 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 MKS1Q9NXB0 559 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 STOML1Q9UBI4 398 aa17.02■□□□□ 0.32
CLCNKA-203ENST00000439316 LACTBL1A8MY62 500 aa17.02■□□□□ 0.31
CLCNKA-203ENST00000439316 E5RJQ4 531 aa17.02■□□□□ 0.31
CLCNKA-203ENST00000439316 FCHO1O14526 889 aa17.02■□□□□ 0.31
CLCNKA-203ENST00000439316 GYG2O15488 501 aa17.02■□□□□ 0.31
CLCNKA-203ENST00000439316 ITGB3P05106 788 aa17.02■□□□□ 0.31
CLCNKA-203ENST00000439316 GJB1P08034 283 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms