RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CYP51A1Q16850 503 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 SETD3Q86TU7 594 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 ARHGEF19Q8IW93 802 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 PPP1R13LQ8WUF5 828 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 TBKBP1A7MCY6 615 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 PLA2G6O60733 806 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 SHMT1P34896 483 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 BST2Q10589 180 aaKnown RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 TMC7Q7Z402 723 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 LHX1P48742 406 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 NDST1P52848 882 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 CCDC15Q0P6D6 951 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 KCNMA1Q12791 1236 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 PHACTR4Q8IZ21 702 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 UBE2OQ9C0C9 1292 aaKnown RBP17.71■□□□□ 0.42
PTPRF-209ENST00000438120 GPAMQ9HCL2 828 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 KCNQ5Q9NR82 932 aa17.71■□□□□ 0.42
PTPRF-209ENST00000438120 DEAF1O75398 565 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-209ENST00000438120 KIAA2013Q8IYS2 634 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 B3GALNT2Q8NCR0 500 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 TMC2Q8TDI7 906 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 SYTL2Q9HCH5 934 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 SMPD4Q9NXE4 827 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 TSPAN16Q9UKR8 245 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 ENO4A6NNW6 628 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 FAM86B1E9PN63 330 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 PQBP1O60828 265 aaKnown RBP17.7■□□□□ 0.42
PTPRF-209ENST00000438120 ALBP02768 609 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 FAM86B2P0C5J1 330 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 AQP5P55064 265 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 RPL10AP62906 217 aaKnown RBP17.7■□□□□ 0.42
PTPRF-209ENST00000438120 MRPL28Q13084 256 aaKnown RBP17.7■□□□□ 0.42
PTPRF-209ENST00000438120 BFSP2Q13515 415 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 DAB2IPQ5VWQ8 1189 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 PDGFCQ9NRA1 345 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 APOA4P06727 396 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 BGNP21810 368 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.7■□□□□ 0.42
PTPRF-209ENST00000438120 KIAA0895Q8NCT3 520 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 LPCAT1Q8NF37 534 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 RIOX1Q9H6W3 641 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 ADIGQ0VDE8 80 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 MICU2Q8IYU8 434 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 TNIP2Q8NFZ5 429 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 M0R3G1 203 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 NR5A2O00482 541 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 EPHB3P54753 998 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 RUNX1T1Q06455 604 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF284Q2VY69 593 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 OLFML2BQ68BL8 750 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF280DQ6N043 979 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 EHD4Q9H223 541 aa17.7■□□□□ 0.42
PTPRF-209ENST00000438120 CAMSAP1Q5T5Y3 1602 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ALDH2P05091 517 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 GHRP10912 638 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF23P17027 643 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 STX5Q13190 355 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 USP13Q92995 863 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 MAGED4Q96JG8 741 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 GPRC5DQ9NZD1 345 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 TIMM44O43615 452 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 RASSF9O75901 435 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 CDH8P55286 799 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ILDR2Q71H61 639 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 CACUL1Q86Y37 369 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 WHRNQ9P202 907 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ZBTB22O15209 634 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ITGALP20701 1170 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 PPATQ06203 517 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 RCN1Q15293 331 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF786Q8N393 782 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 PCSK9Q8NBP7 692 aaKnown RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF518BQ9C0D4 1074 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 COPS7BQ9H9Q2 264 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 CEP170BQ9Y4F5 1589 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 ADM5C9JUS6 153 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 GLP2RO95838 553 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 DARSP14868 501 aaKnown RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 PSMA4P25789 261 aaKnown RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 WLSQ5T9L3 541 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 TTC33Q6PID6 262 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 UCMAQ8WVF2 138 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 SYT15Q9BQS2 421 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 RRAGCQ9HB90 399 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 RBM22Q9NW64 420 aaKnown RBP eCLIP17.69■□□□□ 0.422e-6■■■□□ 18.7
PTPRF-209ENST00000438120 GNG14A0A1W2PPG7 69 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 KRT8P05787 483 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 DSG3P32926 999 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 CNTN1Q12860 1018 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 STARD3Q14849 445 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 DPF3Q92784 378 aa17.69■□□□□ 0.42
PTPRF-209ENST00000438120 PAWRQ96IZ0 340 aaKnown RBP17.69■□□□□ 0.42
PTPRF-209ENST00000438120 O00370 1275 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 CKBP12277 381 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 SUGP1Q8IWZ8 645 aaKnown RBP17.68■□□□□ 0.42
PTPRF-209ENST00000438120 ACTL9Q8TC94 416 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 UBXN6Q9BZV1 441 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 FBXO21O94952 628 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 GJB6O95452 261 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 GZMAP12544 262 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms