RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 CYTH4Q9UIA0 394 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 RASAL2Q9UJF2 1139 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 NDRG2Q9UN36 371 aaKnown RBP19.59■□□□□ 0.73
SHH-203ENST00000435425 KANSL1LA0AUZ9 987 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 FAM170AA1A519 330 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 YJEFN3A6XGL0 299 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 E7ENQ6 273 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 F8VZ95 297 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 DAOAP59103 153 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 EFEMP1Q12805 493 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 PDGFRLQ15198 375 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 TAF3Q5VWG9 929 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 ZNF852Q6ZMS4 543 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 TADA2BQ86TJ2 420 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 MIB1Q86YT6 1006 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 TMEM105Q8N8V8 129 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 FAM3CQ92520 227 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 EDEM1Q92611 657 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 WBP2Q969T9 261 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 ZFRQ96KR1 1074 aaKnown RBP19.58■□□□□ 0.72
SHH-203ENST00000435425 ERGIC2Q96RQ1 377 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 KLF16Q9BXK1 252 aaPredicted RBP19.58■□□□□ 0.72
SHH-203ENST00000435425 CLIC5Q9NZA1 410 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 DNMT3LQ9UJW3 386 aa19.58■□□□□ 0.72
SHH-203ENST00000435425 MTF2Q9Y483 593 aaPredicted RBP19.58■□□□□ 0.72
SHH-203ENST00000435425 FAM170BA6NMN3 283 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 MAN2B1O00754 1011 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 CAVIN2O95810 425 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 DCNP07585 359 aaKnown RBP19.57■□□□□ 0.72
SHH-203ENST00000435425 HMBSP08397 361 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 CYP11B1P15538 503 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 AOC1P19801 751 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 CLCN5P51795 746 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 EML3Q32P44 896 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 BSPRYQ5W0U4 402 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 BHLHA9Q7RTU4 235 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 SCUBE3Q8IX30 993 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 NAP1L5Q96NT1 182 aaPredicted RBP19.57■□□□□ 0.72
SHH-203ENST00000435425 TSPY26PQ9H489 355 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 C8orf33Q9H7E9 229 aaPredicted RBP19.57■□□□□ 0.72
SHH-203ENST00000435425 LTB4R2Q9NPC1 389 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 RAPGEFL1Q9UHV5 662 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 PCDHGC3Q9UN70 934 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 SIT1Q9Y3P8 196 aa19.57■□□□□ 0.72
SHH-203ENST00000435425 OTOL1A6NHN0 477 aaPredicted RBP19.56■□□□□ 0.72
SHH-203ENST00000435425 SPECC1L-ADORA2AF8WAN1 911 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 ACADSBP45954 432 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 FANCCQ00597 558 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 CACNA2D4Q7Z3S7 1137 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 CPA6Q8N4T0 437 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 WDTC1Q8N5D0 677 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 C1orf131Q8NDD1 294 aaKnown RBP19.56■□□□□ 0.72
SHH-203ENST00000435425 PJA1Q8NG27 643 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 RNF139Q8WU17 664 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 ATP2A3Q93084 1043 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 CDK5RAP1Q96SZ6 601 aaKnown RBP19.56■□□□□ 0.72
SHH-203ENST00000435425 DDX23Q9BUQ8 820 aaKnown RBP19.56■□□□□ 0.72
SHH-203ENST00000435425 ECT2Q9H8V3 914 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 TJP2Q9UDY2 1190 aa19.56■□□□□ 0.72
SHH-203ENST00000435425 MRPS17Q9Y2R5 130 aaKnown RBP19.56■□□□□ 0.72
SHH-203ENST00000435425 E2F8A0AVK6 867 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 SHISA7A6NL88 538 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 E5RJQ4 531 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 FBXO21O94952 628 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 GLULP15104 373 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 COL9A1P20849 921 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 TARSP26639 723 aaKnown RBP19.55■□□□□ 0.72
SHH-203ENST00000435425 CTHP32929 405 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 SOX5P35711 763 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 STAT1P42224 750 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 JAM2P57087 298 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 GOLGA8FQ08AF8 430 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 GOLGA8DPQ0D2H9 430 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 PDCLQ13371 301 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 MEA1Q16626 185 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 SMYD5Q6GMV2 418 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 TXNDC11Q6PKC3 985 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 LRSAM1Q6UWE0 723 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 NOP9Q86U38 636 aaKnown RBP19.55■□□□□ 0.72
SHH-203ENST00000435425 SCML4Q8N228 414 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 STK32AQ8WU08 396 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 GOLGA1Q92805 767 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 SLC4A5Q9BY07 1137 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 ABCC13Q9NSE7 274 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 MARCH2Q9P0N8 246 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 CEP83Q9Y592 693 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 MYOFQ9NZM1 2061 aa19.55■□□□□ 0.72
SHH-203ENST00000435425 A0A1B0GTH6 734 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 SLC12A8A0AV02 714 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 SLC9A3R1O14745 358 aaPredicted RBP19.54■□□□□ 0.72
SHH-203ENST00000435425 NFATC1O95644 943 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 LTFP02788 710 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 ARID5AQ03989 594 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 NR1H3Q13133 447 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 PON2Q15165 354 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 KLHDC10Q6PID8 442 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 RALGPS2Q86X27 583 aaPredicted RBP19.54■□□□□ 0.72
SHH-203ENST00000435425 BBS7Q8IWZ6 715 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 ZNF276Q8N554 614 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 IRGQQ8WZA9 623 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms