RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GPRIN1Q7Z2K8 1008 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 DAAM2Q86T65 1068 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 VN1R2Q8NFZ6 395 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PABPC5Q96DU9 382 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 PACSIN1Q9BY11 444 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 FAM204AQ9H8W3 233 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 TRPC7Q9HCX4 862 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 TRMT1Q9NXH9 659 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 IL37Q9NZH6 218 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 GMIPQ9P107 970 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 FAM50BQ9Y247 325 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.57□□□□□ -0.72
CD44-207ENST00000425428 MRPS23Q9Y3D9 190 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 A0A1W2PQH9 124 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 YJEFN3A6XGL0 299 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 SOBPA7XYQ1 873 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 E7ENQ6 273 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 ZNF263O14978 683 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 RFPL2O75678 378 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 GRAP2O75791 330 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 SLC2A3P11169 496 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 RARGP13631 454 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 SLC1A1P43005 524 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 TUBP50607 506 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 PTP4A2Q12974 167 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 ARL13BQ3SXY8 428 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 CCAR2Q8N163 923 aaKnown RBP10.56□□□□□ -0.72
CD44-207ENST00000425428 TRIM58Q8NG06 486 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 KIAA1524Q8TCG1 905 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 FNIP1Q8TF40 1166 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 NECTIN4Q96NY8 510 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 SERPINB11Q96P15 392 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 CNPY3Q9BT09 278 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 TMEM30AQ9NV96 361 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 NENFQ9UMX5 172 aa10.56□□□□□ -0.72
CD44-207ENST00000425428 RANBP2P49792 3224 aaKnown RBP10.56□□□□□ -0.72
CD44-207ENST00000425428 LAMA2P24043 3122 aaKnown RBP10.55□□□□□ -0.72
CD44-207ENST00000425428 TRAV19A0A0A6YYK7 116 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 FAM92AA1XBS5 289 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 TMEM110-MUSTN1A8MSY1 372 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 SPOPO43791 374 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 TLR5O60602 858 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 TUBB4AP04350 444 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 RHOP08100 348 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 HMGA1P17096 107 aaKnown RBP10.55□□□□□ -0.72
CD44-207ENST00000425428 AVPR1AP37288 418 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 CETN2P41208 172 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 SULT1E1P49888 294 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 ZNF143P52747 638 aaPredicted RBP10.55□□□□□ -0.72
CD44-207ENST00000425428 COG7P83436 770 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 MESDQ14696 234 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 SLC25A52Q3SY17 297 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 GRASPQ7Z6J2 395 aaPredicted RBP10.55□□□□□ -0.72
CD44-207ENST00000425428 ZSCAN30Q86W11 494 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 DEFB106AQ8N104 65 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 RXFP2Q8WXD0 754 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 MYLIPQ8WY64 445 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 CDX2Q99626 313 aaPredicted RBP10.55□□□□□ -0.72
CD44-207ENST00000425428 DNMT3LQ9UJW3 386 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 DENND4CQ5VZ89 1909 aa10.55□□□□□ -0.72
CD44-207ENST00000425428 ZNF840PA6NDX5 716 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 TMEM191CA6NGB0 347 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 KIF2AO00139 706 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 BUB1O43683 1085 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 CKMP06732 381 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 MBL2P11226 248 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 FSHRP23945 695 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 RFC1P35251 1148 aaPredicted RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 GTF2F1P35269 517 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-207ENST00000425428 HADHBP55084 474 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 USP46P62068 366 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DEUP1Q05D60 604 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 TCEAL1Q15170 157 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 CDO1Q16878 200 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 SNX30Q5VWJ9 437 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 GPR149Q86SP6 731 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DDX42Q86XP3 938 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-207ENST00000425428 DNAAF5Q86Y56 855 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 ZNF276Q8N554 614 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 UBL4BQ8N7F7 174 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 CLEC4CQ8WTT0 213 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 PPM1EQ8WY54 764 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 EDEM1Q92611 657 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 ARHGEF26Q96DR7 871 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DDX23Q9BUQ8 820 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 ADAM7Q9H2U9 754 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DDIT4Q9NX09 232 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 TJP2Q9UDY2 1190 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 RASAL2Q9UJF2 1139 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 LSM7Q9UK45 103 aaKnown RBP10.54□□□□□ -0.72
CD44-207ENST00000425428 AMFRQ9UKV5 643 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 PYCARDQ9ULZ3 195 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 USTQ9Y2C2 406 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 SYNJ2BP-COX16A0A087WUM0 186 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 A0A1W2PRU2 124 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 M0QYT0 321 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 DPYSL4O14531 572 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 PRPSAP2O60256 369 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 MTA2O94776 668 aa10.54□□□□□ -0.72
CD44-207ENST00000425428 APOEP02649 317 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms