RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DDI1Q8WTU0 396 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 INPP5DQ92835 1189 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZFRQ96KR1 1074 aaKnown RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 PITPNM3Q9BZ71 974 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 PAIP1Q9H074 479 aaKnown RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 EHD2Q9NZN4 543 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZFP69BQ9UJL9 534 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 RPL26L1Q9UNX3 145 aaKnown RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 COL4A1P02462 1669 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 SCN4AP35499 1836 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 TRIM49BA6NDI0 452 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ACKR2O00590 384 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 SERPINI2O75830 405 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZNF286BP0CG31 522 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ETV3P41162 512 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 LRRC14Q15048 493 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 TAS2R42Q7RTR8 314 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 MAP4K3Q8IVH8 894 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 FAM13CQ8NE31 585 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 PXYLP1Q8TE99 480 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 GPATCH1Q9BRR8 931 aaKnown RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 ZSCAN5BA6NJL1 495 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SHBGP04278 402 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SPATA31C1P0DKV0 1188 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 MZF1P28698 734 aaPredicted RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 RXRGP48443 463 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 MRPL28Q13084 256 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 SGO2Q562F6 1265 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 GLB1LQ6UWU2 654 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 DLK2Q6UY11 383 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TRIM72Q6ZMU5 477 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TMEM237Q96Q45 408 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TGS1Q96RS0 853 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 TMEM8AQ9HCN3 771 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TXNRD2Q9NNW7 524 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 RRN3Q9NYV6 651 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP54-205ENST00000424265 NOX1Q9Y5S8 564 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 HUS1O60921 280 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ATP6V1B1P15313 513 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 THPOP40225 353 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 RPL5P46777 297 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 ESRRGP62508 458 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SNX32Q86XE0 403 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 OR7G1Q8NGA0 311 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 NCSTNQ92542 709 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 CFAP36Q96G28 342 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TSEN34Q9BSV6 310 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 DPH5Q9H2P9 285 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 GDF3Q9NR23 364 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 UBQLN1Q9UMX0 589 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 TAF4O00268 1085 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 THOP1P52888 689 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 GJA9P57773 515 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 TMEM132DQ14C87 1099 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SYCP2LQ5T4T6 812 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ZCCHC8Q6NZY4 707 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 DSTYKQ6XUX3 929 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 DPH6Q7L8W6 267 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 PIGWQ7Z7B1 504 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 GATAD2AQ86YP4 633 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ZBED8Q8IZ13 594 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ICA1LQ8NDH6 482 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SH3TC2Q8TF17 1288 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 DHX38Q92620 1227 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 PPP1R16BQ96T49 567 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ST6GALNAC4Q9H4F1 302 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 STMN3Q9NZ72 180 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SMARCAL1Q9NZC9 954 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 GOLGA8MH3BSY2 632 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 PDE2AO00408 941 aaPredicted RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 SERPINB7O75635 380 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 PGM3O95394 542 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 PSMG1O95456 288 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 H2AFZP0C0S5 128 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SPATA31D3P0C874 917 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SMIM10L2AP0DMW4 78 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SMIM10L2BP0DMW5 78 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ZNF12P17014 697 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 NSFP46459 744 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 BCAP31P51572 246 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 CLCN3P51790 818 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 POU5F1Q01860 360 aaKnown RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 BMT2Q1RMZ1 405 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 RNF19BQ6ZMZ0 732 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SPATA31D4Q6ZUB0 917 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 H2AFVQ71UI9 128 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 UBL4BQ8N7F7 174 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 EMID1Q96A84 441 aaPredicted RBP10.16□□□□□ -0.78
USP54-205ENST00000424265 RMDN1Q96DB5 314 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 PSKH2Q96QS6 385 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 ANLNQ9NQW6 1124 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 RNF186Q9NXI6 227 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 SLC12A6Q9UHW9 1150 aa10.16□□□□□ -0.78
USP54-205ENST00000424265 FXR1P51114 621 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-205ENST00000424265 POU5F1BQ06416 359 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 ENDOVQ8N8Q3 282 aaKnown RBP10.15□□□□□ -0.78
USP54-205ENST00000424265 PLEKHO2Q8TD55 490 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 MED10Q9BTT4 135 aa10.15□□□□□ -0.78
USP54-205ENST00000424265 RNF38Q9H0F5 515 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms