RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF358Q9NW07 568 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 MFHAS1Q9Y4C4 1052 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 LOXHD1Q8IVV2 1947 aa21.79■■□□□ 1.08
CTCF-202ENST00000401394 A6NJR5 290 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 I3L4J1 428 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 FAM189A1O60320 539 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ATXN3P54252 364 aaPredicted RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 TEX44Q53QW1 395 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SLC26A11Q86WA9 606 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ECSITQ9BQ95 431 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 CCDC106Q9BWC9 280 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 OXCT2Q9BYC2 517 aaPredicted RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 USP29Q9HBJ7 922 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 POPDC2Q9HBU9 364 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ADAMTS6Q9UKP5 1117 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 COL4A5P29400 1685 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 A0A088AWK7 358 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 MYOCOSA0A1B0GUC4 107 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 APOC4-APOC2K7ER74 178 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 METTL18O95568 372 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 APOC2P02655 101 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 XKR3Q5GH77 459 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 BSPRYQ5W0U4 402 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 UNC5AQ6ZN44 842 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 CYP4V2Q6ZWL3 525 aaPredicted RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 TMPRSS6Q8IU80 811 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SPNS2Q8IVW8 549 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SLC26A7Q8TE54 656 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ALKBH8Q96BT7 664 aaKnown RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 R3HDMLQ9H3Y0 253 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ZNF302Q9NR11 478 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 MAN1C1Q9NR34 630 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ETAA1Q9NY74 926 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 MAGEA13PA6NCF6 341 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ADCY6O43306 1168 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 TRUB2O95900 331 aaKnown RBP21.78■■□□□ 1.08
CTCF-202ENST00000401394 SUPT20HL2P0C7V6 817 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 ABCG1P45844 678 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SUPT20HL1Q3ZLR7 823 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 PPM1JQ5JR12 505 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 CES3Q6UWW8 571 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 C12orf29Q8N999 325 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SLC7A3Q8WY07 619 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 LPIN3Q9BQK8 851 aa21.78■■□□□ 1.08
CTCF-202ENST00000401394 SPECC1L-ADORA2AF8WAN1 911 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 GTF2A2P52657 109 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 HMGCS2P54868 508 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 OLIG2Q13516 323 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 CMPK2Q5EBM0 449 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 EEF1DP3Q658K8 133 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 ATXN7L3BQ96GX2 97 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 PNPOQ9NVS9 261 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 NDE1Q9NXR1 346 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 ZNF212Q9UDV6 495 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 MAGED2Q9UNF1 606 aaPredicted RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 HBS1LQ9Y450 684 aaKnown RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 AFG3L2Q9Y4W6 797 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 TM7SF2O76062 418 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 TGDSO95455 350 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 PEX2P28328 305 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 DLG1Q12959 904 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 HADHQ16836 314 aaKnown RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 CNPY1Q3B7I2 92 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 TTC39BQ5VTQ0 682 aaPredicted RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 DPY19L2Q6NUT2 758 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 UBE2OQ9C0C9 1292 aaKnown RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 DHX33Q9H6R0 707 aaKnown RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 CPSF2Q9P2I0 782 aaKnown RBP21.77■■□□□ 1.08
CTCF-202ENST00000401394 AK5Q9Y6K8 562 aa21.77■■□□□ 1.08
CTCF-202ENST00000401394 BPTFQ12830 3046 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 OATP04181 439 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 KRT7P08729 469 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 CXCL8P10145 99 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 ARL2P36404 184 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 AQP4P55087 323 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 ACTR3P61158 418 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 TMEM132BQ14DG7 1078 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 MAVSQ7Z434 540 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 MYLK4Q86YV6 388 aaPredicted RBP21.76■■□□□ 1.07
CTCF-202ENST00000401394 NIPA2Q8N8Q9 360 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 PCYT2Q99447 389 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 TAGLN3Q9UI15 199 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 G3BP2Q9UN86 482 aaKnown RBP21.76■■□□□ 1.07
CTCF-202ENST00000401394 WDR81Q562E7 1941 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 RNF8O76064 485 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 PROCP04070 461 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 EIF4BP23588 611 aaKnown RBP21.76■■□□□ 1.07
CTCF-202ENST00000401394 PTPN7P35236 360 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 CCNFP41002 786 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 RAP1GDS1P52306 607 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 DSG1Q02413 1049 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 SPDYAQ5MJ70 313 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 BRSK2Q8IWQ3 736 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 RNF149Q8NC42 400 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 ELOVL4Q9GZR5 314 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 DNAJC16Q9Y2G8 782 aa21.76■■□□□ 1.07
CTCF-202ENST00000401394 M0QYV0 167 aa21.75■■□□□ 1.07
CTCF-202ENST00000401394 BUD23O43709 281 aaKnown RBP21.75■■□□□ 1.07
CTCF-202ENST00000401394 SNRPAP09012 282 aaKnown RBP21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms