RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RHOCP08134 193 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L2P0CJ85 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L3P0CJ86 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L4P0CJ87 422 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L5P0CJ88 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L6P0CJ89 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4L7P0CJ90 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 STAG3L1P0CL83 205 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 CCNG1P51959 295 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 BNC2Q6ZN30 1099 aaPredicted RBP14.12□□□□□ -0.15
COL4A1-201ENST00000375820 PAFAH2Q99487 392 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 VIPAS39Q9H9C1 493 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 MRPL39Q9NYK5 338 aaKnown RBP14.12□□□□□ -0.15
COL4A1-201ENST00000375820 DUX4Q9UBX2 424 aa14.12□□□□□ -0.15
COL4A1-201ENST00000375820 FOXP2O15409 715 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 FAM86B2P0C5J1 330 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 DPEP1P16444 411 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 PSMB9P28065 219 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 TKFCQ3LXA3 575 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 AGKQ53H12 422 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SEL1L3Q68CR1 1132 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 UTS2BQ765I0 119 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 RUBCNQ92622 972 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ZBTB10Q96DT7 871 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 KIF2CQ99661 725 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 COLEC11Q9BWP8 271 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SMPD4Q9NXE4 827 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 AK9Q5TCS8 1911 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 MOXD2PA6NHM9 499 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 NUDT14O95848 222 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ACADMP11310 421 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 FDPSP14324 419 aaKnown RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 BCL2L14Q9BZR8 327 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ATXN3LQ9H3M9 355 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 KRCC1Q9NPI7 259 aaPredicted RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 MIEF1Q9NQG6 463 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 USP18Q9UMW8 372 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SLC9A8Q9Y2E8 581 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 KLHL20Q9Y2M5 609 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SPACA6W5XKT8 324 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 KDM6AO15550 1401 aaPredicted RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 CKBP12277 381 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 AKAP5P24588 427 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 STX5Q13190 355 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 EDRF1Q3B7T1 1238 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SUGP1Q8IWZ8 645 aaKnown RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 TMC2Q8TDI7 906 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 GLT1D1Q96MS3 346 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 FHDC1Q9C0D6 1143 aaPredicted RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 NDOR1Q9UHB4 597 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SPATA31E1Q6ZUB1 1445 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SDR42E2A6NKP2 422 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 NOS3P29474 1203 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 CCT8P50990 548 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 COX10Q12887 443 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 CRYMQ14894 314 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ZNF284Q2VY69 593 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 TFDP3Q5H9I0 405 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 EPHX4Q8IUS5 362 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 DDHD1Q8NEL9 900 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 MRPS26Q9BYN8 205 aaKnown RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 OVOS2A0A0G2JMS6 1433 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 OVOS2A0A0J9YW53 1432 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 OVOS2Q6IE36 1432 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 SCAMP3O14828 347 aaKnown RBP14.11□□□□□ -0.15
COL4A1-201ENST00000375820 FAM20BO75063 409 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 GRB10Q13322 594 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 ATP1A4Q13733 1029 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 TMEM132BQ14DG7 1078 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 TOMM20Q15388 145 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 AP4E1Q9UPM8 1137 aa14.11□□□□□ -0.15
COL4A1-201ENST00000375820 PDZK1P1A8MUH7 402 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 TBX3O15119 743 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 CETPP11597 493 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 CYB5D1Q6P9G0 228 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 C16orf59Q7L2K0 433 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 MMGT1Q8N4V1 131 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 KCND2Q9NZV8 630 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 PDE5AO76074 875 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 CYP11B1P15538 503 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 NQO1P15559 274 aaKnown RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 GARTP22102 1010 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 DPP10Q8N608 796 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 ZSCAN18Q8TBC5 510 aaPredicted RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 SERPINB12Q96P63 405 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 SPON1Q9HCB6 807 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 UBQLN1Q9UMX0 589 aaKnown RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 AAR2Q9Y312 384 aaKnown RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 CAPN6Q9Y6Q1 641 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 MAPK7Q13164 816 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 BOP1Q14137 746 aaKnown RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 NR6A1Q15406 480 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 RSBN1Q5VWQ0 802 aaPredicted RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 SETD3Q86TU7 594 aaPredicted RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 COLGALT1Q8NBJ5 622 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 CASP10Q92851 521 aa14.1□□□□□ -0.15
COL4A1-201ENST00000375820 GFM2Q969S9 779 aaKnown RBP14.1□□□□□ -0.15
COL4A1-201ENST00000375820 C6orf62Q9GZU0 229 aaPredicted RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms