RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CDKN2BP42772 138 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SSR1P43307 286 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 PSEN1P49768 467 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 RABGGTBP53611 331 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 ARPP19P56211 112 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SCAPQ12770 1279 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 DUSP4Q13115 394 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SIX1Q15475 284 aaPredicted RBP15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 DDR2Q16832 855 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 LONRF2Q1L5Z9 754 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 GLE1Q53GS7 698 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 DCAF6Q58WW2 860 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SH3PXD2AQ5TCZ1 1133 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 MSANTD2Q6P1R3 559 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SPOCD1Q6ZMY3 1216 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SCD5Q86SK9 330 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 TCEAL8Q8IYN2 117 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 ZNF276Q8N554 614 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 KLHL23Q8NBE8 558 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 RUBCNQ92622 972 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 DPF3Q92784 378 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 NTAN1Q96AB6 310 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SAMD11Q96NU1 681 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 OSBPL8Q9BZF1 889 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 SLITRK6Q9H5Y7 841 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 NGRNQ9NPE2 291 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 ABCC13Q9NSE7 274 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 CLIC5Q9NZA1 410 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 PLXNA3P51805 1871 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 hCG_1818297A0A087WSY0 165 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 TARSL2A2RTX5 802 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 KRIT1O00522 736 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 TUBBP07437 444 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 ZDHHC11BP0C7U3 371 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 RARAP10276 462 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 RPL17P18621 184 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 ATF6P18850 670 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 TFE3P19532 575 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 MAGEA10P43363 369 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 GPR15P49685 360 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 SULT1E1P49888 294 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 YWHAGP61981 247 aaKnown RBP eCLIP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 ATP11AP98196 1134 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 PDK2Q15119 407 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 DPYSL2Q16555 572 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 MGAT5BQ3V5L5 792 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 TFDP3Q5H9I0 405 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 COL13A1Q5TAT6 717 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 SYPL2Q5VXT5 272 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 AADACL2Q6P093 401 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 MFSD7Q6UXD7 560 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 GPR161Q8N6U8 529 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 PRELID2Q8N945 189 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 OVCA2Q8WZ82 227 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 RAPGEF5Q92565 580 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 FAF2Q96CS3 445 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 MYRFLQ96LU7 910 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 SMOC2Q9H3U7 446 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 WDR6Q9NNW5 1121 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 MTUS1Q9ULD2 1270 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 NAALADL1Q9UQQ1 740 aa15.56■□□□□ 0.08
CCDC88C-202ENST00000334448 DYNC1I1O14576 645 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 CAPN9O14815 690 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 TEX28O15482 410 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 RALAP11233 206 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 KDELR1P24390 212 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 YWHAQP27348 245 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 CTNNB1P35222 781 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 FNTAP49354 379 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 C2orf54Q08AI8 447 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 NNTQ13423 1086 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 CDO1Q16878 200 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 ERCC6LQ2NKX8 1250 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 ATP13A4Q4VNC1 1196 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 RAB6CQ53S08 254 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 C9orf50Q5SZB4 431 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 TEX35Q5T0J7 233 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 SNX30Q5VWJ9 437 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 ANKS1BQ7Z6G8 1248 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 ZDHHC14Q8IZN3 488 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 DQX1Q8TE96 717 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 TRMT2BQ96GJ1 504 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 RUNDC3BQ96NL0 473 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 SEPT5Q99719 369 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 ZNF670Q9BS34 389 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 HERPUD2Q9BSE4 406 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 SNRNP25Q9BV90 132 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 RAB6CQ9H0N0 254 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 PRDM16Q9HAZ2 1276 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 HOMER3Q9NSC5 361 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 CALCOCO1Q9P1Z2 691 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 RCOR3Q9P2K3 495 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 PCSK1NQ9UHG2 260 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 YIPF1Q9Y548 306 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 PCDHA11Q9Y5I1 949 aa15.55■□□□□ 0.08
CCDC88C-202ENST00000334448 LRRD1A4D1F6 860 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SLC38A8A6NNN8 435 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 M0QYT0 321 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 C2CD2LO14523 706 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 PHF2O75151 1096 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms