RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 EDEM1Q92611 657 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 GOLGA1Q92805 767 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 IRF7Q92985 503 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 EDEM3Q9BZQ6 932 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 SYNCQ9H7C4 482 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CFAP97Q9P2B7 532 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 RASAL2Q9UJF2 1139 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 DNMT3LQ9UJW3 386 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 CA14Q9ULX7 337 aa16.67■□□□□ 0.26
CCDC28A-201ENST00000332797 PAPSS1O43252 624 aaPredicted RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 SART1O43290 800 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 LSM8O95777 96 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 LTFP02788 710 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 IRF1P10914 325 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 TCF3P15923 654 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 CDH5P33151 784 aaPredicted RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 FMO1Q01740 532 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 PFKPQ01813 784 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 EFEMP1Q12805 493 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 ASIC2Q16515 512 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 PTPN20Q4JDL3 420 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 SFMBT2Q5VUG0 894 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 BSPRYQ5W0U4 402 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 DDX42Q86XP3 938 aaKnown RBP eCLIP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 MIB1Q86YT6 1006 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 IPO4Q8TEX9 1081 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 CPLX3Q8WVH0 158 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 ZFRQ96KR1 1074 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 GKN1Q9NS71 199 aa16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 SEPT11Q9NVA2 429 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-201ENST00000332797 ITIH6Q6UXX5 1313 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 KIF26AQ9ULI4 1882 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 A0A1W2PQJ5 194 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 FAM86C2PA6NEL3 165 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 TMEM221A6NGB7 291 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 M0R296 226 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 SCAMP3O14828 347 aaKnown RBP16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ERBB2P04626 1255 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 SNX16P57768 344 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 NOMO3P69849 1222 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 NAA35Q5VZE5 725 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 KLHDC10Q6PID8 442 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 IRF2BP2Q7Z5L9 587 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ZNF276Q8N554 614 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 CSGALNACT1Q8TDX6 532 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 RNF139Q8WU17 664 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 CPA5Q8WXQ8 436 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 DNASE1L2Q92874 299 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 FAM149B1Q96BN6 582 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 IQCDQ96DY2 449 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ASIC4Q96FT7 647 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ANP32EQ9BTT0 268 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ABCC13Q9NSE7 274 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 WNT16Q9UBV4 365 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 WNT6Q9Y6F9 365 aa16.65■□□□□ 0.26
CCDC28A-201ENST00000332797 ARNTLO00327 626 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 IFNAR2P48551 515 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TNK2Q07912 1038 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 GOLGA8FQ08AF8 430 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 GOLGA8DPQ0D2H9 430 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 IER5LQ5T953 404 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 E4F1Q66K89 784 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TRIM68Q6AZZ1 485 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 OR6B2Q6IFH4 312 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 SARM1Q6SZW1 724 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TRIM72Q6ZMU5 477 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 FAM183BPQ6ZVS7 135 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 ERICH1Q86X53 443 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 SIX5Q8N196 739 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 MSANTD4Q8NCY6 345 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 ZNF397Q8NF99 534 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TTC8Q8TAM2 541 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 OSCP1Q8WVF1 389 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 PIWIL1Q96J94 861 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 AGPAT1Q99943 283 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 KLF16Q9BXK1 252 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TRIM5Q9C035 493 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 ARHGEF3Q9NR81 526 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 OLA1Q9NTK5 396 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 DUS2Q9NX74 493 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 MARCH2Q9P0N8 246 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 STRIP2Q9ULQ0 834 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 SH3BP1Q9Y3L3 701 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 TICRRQ7Z2Z1 1910 aa16.64■□□□□ 0.25
CCDC28A-201ENST00000332797 AP5Z1O43299 807 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 CYP1A1P04798 512 aaPredicted RBP16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 GYPCP04921 128 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC44A4Q53GD3 710 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 SPECC1LQ69YQ0 1117 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 WBP2Q969T9 261 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 PCDHB18PQ96TA0 734 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 FAM83CQ9BQN1 747 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 EBF3Q9H4W6 596 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 HEBP1Q9NRV9 189 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 AIPL1Q9NZN9 384 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 CAPN11Q9UMQ6 739 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 COL4A2P08572 1712 aa16.63■□□□□ 0.25
CCDC28A-201ENST00000332797 SLC12A8A0AV02 714 aa16.62■□□□□ 0.25
CCDC28A-201ENST00000332797 KRBA1A5PL33 1030 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms