RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 SPATA31D3P0C874 917 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 AKAP5P24588 427 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 EFTUD2Q15029 972 aaKnown RBP eCLIP16.18■□□□□ 0.186e-7■■■■■ 33.2
SHROOM1-201ENST00000319854 SPATA31D4Q6ZUB0 917 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 SCUBE3Q8IX30 993 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 C18orf25Q96B23 403 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 CFAP57Q96MR6 1250 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 ACAP3Q96P50 834 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 B3GNT5Q9BYG0 378 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 HEY1Q9Y5J3 304 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 CCL15-CCL14A0A0B4J2E2 113 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 MED7O43513 233 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 SSTR1P30872 391 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 VCPP55072 806 aaKnown RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 CCL15Q16663 113 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 SLC45A4Q5BKX6 768 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 RINLQ6ZS11 566 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 ALLCQ8N6M5 410 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 NETO2Q8NC67 525 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 ZNF75CPQ92670 426 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 AZIN2Q96A70 460 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 KLF6Q99612 283 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 OSMRQ99650 979 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 TSPAN16Q9UKR8 245 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 TCRBV7S3A2A0A539 114 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 MAGEA13PA6NCF6 341 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 GOLGA8RI6L899 631 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 GSTA2P09210 222 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 ETS2P15036 469 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 PDGFRAP16234 1089 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 CDH6P55285 790 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 LAMC2Q13753 1193 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 STAT4Q14765 748 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 HADHQ16836 314 aaKnown RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 CNPY1Q3B7I2 92 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 BBS9Q3SYG4 887 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 PPP6R3Q5H9R7 873 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 FAXCQ5TGI0 409 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 SYDE1Q6ZW31 735 aaPredicted RBP16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 UNC45BQ8IWX7 931 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 PTPRN2Q92932 1015 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 NDNQ99608 321 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 BTBD10Q9BSF8 475 aa16.18■□□□□ 0.18
SHROOM1-201ENST00000319854 BTBD19C9JJ37 291 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 DNALI1O14645 258 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 DYNC1LI2O43237 492 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 CILPO75339 1184 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 CA4P22748 312 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 GBP5Q96PP8 586 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 SYT17Q9BSW7 474 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 MAGEB5Q9BZ81 275 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 STRIP2Q9ULQ0 834 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 MGAMO43451 1857 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 C2CD2LO14523 706 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 CYP3A5P20815 502 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 AMPD1P23109 780 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 SLC25A11Q02978 314 aaKnown RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 GRIK4Q16099 956 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 LRRC23Q53EV4 343 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 RGS9BPQ6ZS82 235 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 PTCD3Q96EY7 689 aaKnown RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 CCDC77Q9BR77 488 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 EIF2AQ9BY44 585 aaKnown RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 FBXO6Q9NRD1 293 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 USP18Q9UMW8 372 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 PCDHGC3Q9UN70 934 aa16.17■□□□□ 0.18
SHROOM1-201ENST00000319854 C2orf71A6NGG8 1288 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 IL18RAPO95256 599 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 KDELR1P24390 212 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 SLC26A2P50443 739 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 AP1B1Q10567 949 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 SMAD1Q15797 465 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 LVRNQ6Q4G3 990 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 CATSPER4Q7RTX7 472 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 SPATA18Q8TC71 538 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 RXFP2Q8WXD0 754 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 TUBGCP5Q96RT8 1024 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 PEBP4Q96S96 227 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 MRPL45Q9BRJ2 306 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 ZNF518BQ9C0D4 1074 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 ALG13Q9NP73 1137 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 TUBGCP4Q9UGJ1 667 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 PRPF4O43172 522 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 ADCY6O43306 1168 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 TSPAN1O60635 241 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 SMPD1P17405 629 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 GRM1Q13255 1194 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 GOLGA7BQ2TAP0 167 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 MSS51Q4VC12 460 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 RASIP1Q5U651 963 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 EXOC8Q8IYI6 725 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 ZCCHC9Q8N567 271 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 OR6B3Q8NGW1 331 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 C16orf70Q9BSU1 422 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 MAK16Q9BXY0 300 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 HEY2Q9UBP5 337 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 RPL26L1Q9UNX3 145 aaKnown RBP16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 OTOFQ9HC10 1997 aa16.16■□□□□ 0.18
SHROOM1-201ENST00000319854 SYNJ2BP-COX16A0A087WUM0 186 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms