RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 HESX1Q9UBX0 185 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 MEI4A8MW99 385 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 ZNF286BP0CG31 522 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 GPD1P21695 349 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 AP2B1P63010 937 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 SH3PXD2AQ5TCZ1 1133 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 SCUBE1Q8IWY4 988 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 GPRC5AQ8NFJ5 357 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 DCAKDQ8WVC6 231 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 WDR60Q8WVS4 1066 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 DHX33Q9H6R0 707 aaKnown RBP10.92□□□□□ -0.66
COL3A1-202ENST00000317840 FAM49BQ9NUQ9 324 aa10.92□□□□□ -0.66
COL3A1-202ENST00000317840 APOBEC2Q9Y235 224 aaKnown RBP10.92□□□□□ -0.66
COL3A1-202ENST00000317840 SPATA31C2B4DYI2 1134 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 TBX10O75333 385 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SPAG6O75602 509 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 VTNP04004 478 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 MYL3P08590 195 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 ZNF157P51786 506 aaPredicted RBP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 LAMTOR4Q0VGL1 99 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 PRAMEF19Q5SWL8 479 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 ZPBP2Q6X784 338 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 POU5F2Q8N7G0 328 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 CCNYQ8ND76 341 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 UPF1Q92900 1129 aaKnown RBP eCLIP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 PAPOLBQ9NRJ5 636 aaKnown RBP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 LRRC42Q9Y546 428 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 WASF2Q9Y6W5 498 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SPDYE5A6NIY4 337 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SMAPO00193 183 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 ERBB2P04626 1255 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SAT1P21673 171 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 HSDL1Q3SXM5 330 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 RNF220Q5VTB9 566 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 IZUMO2Q6UXV1 221 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 CATSPER4Q7RTX7 472 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SDCCAG8Q86SQ7 713 aaPredicted RBP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 RSPH3Q86UC2 560 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 NME8Q8N427 588 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 WDTC1Q8N5D0 677 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 AFG1LQ8WV93 481 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 SLC44A1Q8WWI5 657 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 CDKL2Q92772 493 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 FAM149B1Q96BN6 582 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 FERMT1Q9BQL6 677 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 IFT122Q9HBG6 1241 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 CNTNAP2Q9UHC6 1331 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 PDHXO00330 501 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 B4GALT5O43286 388 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 HMGCRP04035 888 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 TMPRSS6Q8IU80 811 aa10.91□□□□□ -0.66
COL3A1-202ENST00000317840 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
COL3A1-202ENST00000317840 MICAL2O94851 1124 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 CACNA2D1P54289 1103 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 TAF1CQ15572 869 aaPredicted RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 C16orf46Q6P387 395 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 FGD4Q96M96 766 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 SH3GL3Q99963 347 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 TRIM56Q9BRZ2 755 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 FRMD8P1Q9BZ68 369 aaPredicted RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 AFG3L2Q9Y4W6 797 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 ACADSP16219 412 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 GNAZP19086 355 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 ARL2P36404 184 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 RPL10AP62906 217 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 HIC1Q14526 733 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 MXD4Q14582 209 aaPredicted RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 GRAMD1BQ3KR37 738 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 IER5Q5VY09 327 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 EEF1DP3Q658K8 133 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 HEATR6Q6AI08 1181 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 SYT15Q9BQS2 421 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 CNPY3Q9BT09 278 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 E5RJQ4 531 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 UGT1A9O60656 530 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 TRUB2O95900 331 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 EDN1P05305 212 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 AMPD1P23109 780 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 SATB1Q01826 763 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 SLC25A11Q02978 314 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 BIRC2Q13490 618 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 ZC3H12AQ5D1E8 599 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 MPZL3Q6UWV2 235 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 RASSF3Q86WH2 238 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 KIAA0319LQ8IZA0 1049 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 TMEM130Q8N3G9 435 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 RBM15BQ8NDT2 890 aaKnown RBP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.9□□□□□ -0.66
COL3A1-202ENST00000317840 TMEM176AQ96HP8 235 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 UGT1A7Q9HAW7 530 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 UGT1A10Q9HAW8 530 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 UGT1A8Q9HAW9 530 aa10.9□□□□□ -0.66
COL3A1-202ENST00000317840 NFICP08651 508 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 KCNA4P22459 653 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 ADCYAP1R1P41586 468 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 PSEN1P49768 467 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CLDN10P78369 228 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CRADDP78560 199 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms