RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NUP93Q8N1F7 819 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 POMGNT2Q8NAT1 580 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 IGDCC4Q8TDY8 1250 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 PNKPQ96T60 521 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FKBP14Q9NWM8 211 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 STUB1Q9UNE7 303 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 PSMD13Q9UNM6 376 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 TRIM66O15016 1216 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 RAD51CO43502 376 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 RECQL5O94762 991 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-201ENST00000303395 BCL10O95999 233 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 DARSP14868 501 aaKnown RBP5.4□□□□□ -1.54
SCN1A-201ENST00000303395 NR4A1P22736 598 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 CRABP2P29373 138 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 BCAP31P51572 246 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 GTF2H3Q13889 308 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 RUNDC3AQ59EK9 446 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 ARHGEF16Q5VV41 709 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 DARS2Q6PI48 645 aaKnown RBP5.4□□□□□ -1.54
SCN1A-201ENST00000303395 SEC14L1Q92503 715 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 INPP4AQ96PE3 977 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FSD1LQ9BXM9 530 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 TLR10Q9BXR5 811 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 MLXIPQ9HAP2 919 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 SLC39A2Q9NP94 309 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 TAS2R1Q9NYW7 299 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 ANAPC7Q9UJX3 599 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 ANAPC2Q9UJX6 822 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 B3GNT3Q9Y2A9 372 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC42Q9Y546 428 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC37A3O60309 1634 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 SYNJ2BP-COX16A0A087WUM0 186 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 USP17L12C9JPN9 530 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 USP17L21D6R901 530 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 UBAP1LF5GYI3 381 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 ENC1O14682 589 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 SIN3BO75182 1162 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 NDUFS2O75306 463 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 CCNA1P78396 465 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 ABCB5Q2M3G0 1257 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FAM173BQ6P4H8 233 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 KIAA0408Q6ZU52 694 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 METTL3Q86U44 580 aaKnown RBP5.4□□□□□ -1.54
SCN1A-201ENST00000303395 CNTD1Q8N815 330 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 TBC1D16Q8TBP0 767 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 OSBP2Q969R2 916 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 COX16Q9P0S2 106 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 PI4KBQ9UBF8 816 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 POLG2Q9UHN1 485 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FEM1BQ9UK73 627 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 GDAQ9Y2T3 454 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FIS1Q9Y3D6 152 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 FADS3Q9Y5Q0 445 aa5.4□□□□□ -1.54
SCN1A-201ENST00000303395 APC2O95996 2303 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 FAM92AA1XBS5 289 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 CENPXA8MT69 81 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TULP3O75386 442 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TOM1L1O75674 476 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SUPT7LO94864 414 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PROSCO94903 275 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ARF4P18085 180 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 RNASE9P60153 205 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TXNL4AP83876 142 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 C1DQ13901 141 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 COG2Q14746 738 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 FBXO43Q4G163 708 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SDE2Q6IQ49 451 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PDXDC2PQ6P474 469 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PTPRN2Q92932 1015 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SPATA16Q9BXB7 569 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 C20orf96Q9NUD7 363 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SNX24Q9Y343 169 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 MYH8P13535 1937 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ASTN2O75129 1339 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ME2P23368 584 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 RXRBP28702 533 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TGFBR2P37173 567 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 FXR1P51114 621 aaKnown RBP eCLIP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 VAMP7P51809 220 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 FAM83EQ2M2I3 478 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 C15orf52Q6ZUT6 534 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 GPD1LQ8N335 351 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 KCTD6Q8NC69 237 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 NR4A3Q92570 626 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TMCO6Q96DC7 493 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PCDH18Q9HCL0 1135 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 DDX18Q9NVP1 670 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PHTF1Q9UMS5 762 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 MAGEB3O15480 346 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SUPT3HO75486 399 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 MFN2O95140 757 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ITGAVP06756 1048 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 FAM163BP0C2L3 166 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ACADLP28330 430 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 DRAP1Q14919 205 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 MAPRE1Q15691 268 aaKnown RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SPANXN2Q5MJ10 180 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 SFR1Q86XK3 245 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 RFX6Q8HWS3 928 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 GALNT13Q8IUC8 556 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms