RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 THTPAQ9BU02 230 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 FAM129AQ9BZQ8 928 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 FAM96AQ9H5X1 160 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 LRRC4BQ9NT99 713 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 CACNG4Q9UBN1 327 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 HOXA2O43364 376 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PHF2O75151 1096 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 TCF3P15923 654 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 DHX34Q14147 1143 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 BNIPLQ7Z465 357 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 MTBPQ96DY7 904 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 TKTL2Q9H0I9 626 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 VPS26AO75436 327 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 CD44P16070 742 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 SHMT1P34896 483 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 AP5B1Q2VPB7 878 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 CAPRIN2Q6IMN6 1127 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 OSGEPQ9NPF4 335 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 AP4E1Q9UPM8 1137 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 FAM205AQ6ZU69 1335 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PHF20L1A8MW92 1017 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PIRTP0C851 137 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 SMIM10L2AP0DMW4 78 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 SMIM10L2BP0DMW5 78 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PFKPQ01813 784 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PRKAA1Q13131 559 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 BMPR2Q13873 1038 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 ADSSL1Q8N142 457 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 NDRG1Q92597 394 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 FERD3LQ96RJ6 166 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 WDR24Q96S15 920 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 BBS2Q9BXC9 721 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PDS5AQ29RF7 1337 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 CLASP2O75122 1294 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 FDPSP14324 419 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PON1P27169 355 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 KLHDC7AQ5VTJ3 777 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 WSCD1Q658N2 575 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 NPNTQ6UXI9 565 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PRR23BQ6ZRT6 265 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 PRUNE1Q86TP1 453 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 KIAA0319LQ8IZA0 1049 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 MYO1HQ8N1T3 1032 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 ALLCQ8N6M5 410 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 UBE2OQ9C0C9 1292 aaKnown RBP8.05□□□□□ -1.12
SCN9A-201ENST00000303354 ANKEF1Q9NU02 776 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 RPS6KL1Q9Y6S9 549 aa8.05□□□□□ -1.12
SCN9A-201ENST00000303354 CLASP1Q7Z460 1538 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 CLTCL1P53675 1640 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 FAM47E-STBD1D6RA91 191 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SLC1A1P43005 524 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 MAGEA4P43358 317 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 STILQ15468 1287 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 RNF44Q7L0R7 432 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 TTC39CQ8N584 583 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 TLE6Q9H808 572 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SAE1Q9UBE0 346 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 LHX1P48742 406 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GIT2Q14161 759 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 C16orf87Q6PH81 154 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF558Q96NG5 402 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 CLPBQ9H078 707 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 RBM12Q9NTZ6 932 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GPRC5DQ9NZD1 345 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 LNPEPQ9UIQ6 1025 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 PCDHB2Q9Y5E7 798 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 MDM4O15151 490 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 LGALS2P05162 132 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 VDRP11473 427 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 TNFSF9P41273 254 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GEMP55040 296 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 EARS2Q5JPH6 523 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 PSRC1Q6PGN9 363 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 LONP2Q86WA8 852 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SOCS4Q8WXH5 440 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 MCRS1Q96EZ8 462 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 ECSITQ9BQ95 431 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GRK2P25098 689 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 TTC39BQ5VTQ0 682 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GLT6D1Q7Z4J2 308 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 CHPFQ8IZ52 775 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 NRBF2Q96F24 287 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 ETNK1Q9HBU6 452 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SLC16A3O15427 465 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 UMPSP11172 480 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GUCA1AP43080 201 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 KCNK10P57789 538 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SETMARQ53H47 684 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 KIF2BQ8N4N8 673 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 CXorf40AQ8TE69 158 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 CNOT10Q9H9A5 744 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GOLGA2P5Q9HBQ8 144 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 TSPAN8P19075 237 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 HDCP19113 662 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 IL10P22301 178 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 GTF2E2P29084 291 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 ABL2P42684 1182 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 MAPRE1Q15691 268 aaKnown RBP8.04□□□□□ -1.12
SCN9A-201ENST00000303354 SLC18A3Q16572 532 aa8.04□□□□□ -1.12
SCN9A-201ENST00000303354 PLEKHM3Q6ZWE6 761 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms