RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 IPMKQ8NFU5 416 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 TMEM8AQ9HCN3 771 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 ZNF112Q9UJU3 913 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 SPATA31E1Q6ZUB1 1445 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 ROBO2Q9HCK4 1378 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 CYP27B1O15528 508 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 EXTL3O43909 919 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 ENTPD3O75355 529 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 SOAT2O75908 522 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 SRGNP10124 158 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 HSD3B1P14060 373 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 NAB2Q15742 525 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 SH3BP4Q9P0V3 963 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 ZNRF3Q9ULT6 936 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 NMT2O60551 498 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 IGFBP4P22692 258 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 GCLCP48506 637 aaPredicted RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 ZNF543Q08ER8 600 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 TDRD10Q5VZ19 366 aaKnown RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 RBBP8NLQ8NC74 664 aaPredicted RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 RIN2Q8WYP3 895 aaPredicted RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 ISCA1Q9BUE6 129 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 TRIM10Q9UDY6 481 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 MGAT4AQ9UM21 535 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 EIF3LQ9Y262 564 aaKnown RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 KPNA6O60684 536 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 STARP49675 285 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 SBK1Q52WX2 424 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 ZNF671Q8TAW3 534 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 CASP10Q92851 521 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 CELF1Q92879 486 aaKnown RBP12.43□□□□□ -0.42
PCF11-201ENST00000298281 CPVLQ9H3G5 476 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 DSN1Q9H410 356 aa12.43□□□□□ -0.42
PCF11-201ENST00000298281 KPNA5O15131 536 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 CPA3P15088 417 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 PIF1Q9H611 641 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 MTMR4Q9NYA4 1195 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 LRCH1Q9Y2L9 728 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 SF3B1O75533 1304 aaKnown RBP eCLIP12.42□□□□□ -0.421e-6■■■■■ 72.6
PCF11-201ENST00000298281 TPD52L2O43399 206 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 UCHL3P15374 230 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 AMPD2Q01433 879 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 SGCGQ13326 291 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TAF5Q15542 800 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 PAN2Q504Q3 1202 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 RMND5BQ96G75 393 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 CRAMP1Q96RY5 1269 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 RIT2Q99578 217 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 OSBPL8Q9BZF1 889 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 GJB4Q9NTQ9 266 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 HBP1O60381 514 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 RPS6KA5O75582 802 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 RHOBTB3O94955 611 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 PSMD7P51665 324 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 ZNF157P51786 506 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 GALCP54803 685 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 HMGCS2P54868 508 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 MARSP56192 900 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 RSBN1Q5VWQ0 802 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 CCNJLQ8IV13 435 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TPD52L3Q96J77 140 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 MARCOQ9UEW3 520 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 FAM25EA8MYX2 175 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 CCT3P49368 545 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 STX5Q13190 355 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 PRMT1Q99873 361 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 TRIM2Q9C040 744 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 ROGDIQ9GZN7 287 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TMEM138Q9NPI0 162 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TEX33O43247 280 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 STAU1O95793 577 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 C6orf222P0C671 652 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 ACTN3Q08043 901 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 ARID5BQ14865 1188 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 NOTUMQ6P988 496 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 CYP20A1Q6UW02 462 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 NEK6Q9HC98 313 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 NYAP2Q9P242 653 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 CHKBQ9Y259 395 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TRIM17Q9Y577 477 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 C2orf81A6NN90 581 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 VAV1P15498 845 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 PSMD4P55036 377 aaKnown RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 PTK7Q13308 1070 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 TAF1CQ15572 869 aaPredicted RBP12.42□□□□□ -0.42
PCF11-201ENST00000298281 MCEEQ96PE7 176 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 MAP3K14Q99558 947 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 FKBP14Q9NWM8 211 aa12.42□□□□□ -0.42
PCF11-201ENST00000298281 A0A1B0GTH6 734 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 PREPLQ4J6C6 727 aaPredicted RBP12.41□□□□□ -0.42
PCF11-201ENST00000298281 BOLA3Q53S33 107 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 NAT9Q9BTE0 207 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 ANKEF1Q9NU02 776 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 SOHLH2Q9NX45 425 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 ZNF682O95780 498 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 MYL12AP19105 171 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 NMT1P30419 496 aaKnown RBP12.41□□□□□ -0.42
PCF11-201ENST00000298281 FDFT1P37268 417 aa12.41□□□□□ -0.42
PCF11-201ENST00000298281 IL12RB1P42701 662 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms