RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ALDH2P05091 517 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAM153BP0C7A2 387 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 NOS2P35228 1153 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 RABGGTBP53611 331 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 MRPL58Q14197 206 aaKnown RBP16.22■□□□□ 0.19
LSM6-201ENST00000296581 KCTD19Q17RG1 926 aaPredicted RBP16.22■□□□□ 0.19
LSM6-201ENST00000296581 SLC25A52Q3SY17 297 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAM153CQ494X1 144 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 C4orf50Q6ZRC1 276 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 VSIG1Q86XK7 387 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 SCML4Q8N228 414 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAM149B1Q96BN6 582 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 GDAP1L1Q96MZ0 367 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 NEUROG2Q9H2A3 272 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAM153AQ9UHL3 310 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 LIASO43766 372 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 CORO7P57737 925 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 IKBKEQ14164 716 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 HLTFQ14527 1009 aaKnown RBP eCLIP16.22■□□□□ 0.19
LSM6-201ENST00000296581 PDK2Q15119 407 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 SCYL2Q6P3W7 929 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAM71BQ8TC56 605 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 PAWRQ96IZ0 340 aaKnown RBP16.22■□□□□ 0.19
LSM6-201ENST00000296581 NPY6RQ99463 290 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 TRIM31Q9BZY9 425 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 POPDC2Q9HBU9 364 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FAN1Q9Y2M0 1017 aa16.22■□□□□ 0.19
LSM6-201ENST00000296581 FGFR3P22607 806 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 GBP1P32455 592 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 CDH6P55285 790 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 PTK6Q13882 451 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 LRRC26Q2I0M4 334 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 VARS2Q5ST30 1063 aaKnown RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 OTUD1Q5VV17 481 aaPredicted RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.21■□□□□ 0.19
LSM6-201ENST00000296581 HFE2Q6ZVN8 426 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 BHLHA9Q7RTU4 235 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 SPATA2LQ8IUW3 424 aaPredicted RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 DCP1BQ8IZD4 617 aaKnown RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 LRRC43Q8N309 656 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 MREGQ8N565 214 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 IRGQQ8WZA9 623 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 SNRNP25Q9BV90 132 aaKnown RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 FRMD8P1Q9BZ68 369 aaPredicted RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 GRHL1Q9NZI5 618 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 HCSTQ9UBK5 93 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 HPCAL4Q9UM19 191 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 SNX24Q9Y343 169 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 NEU2Q9Y3R4 380 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 ZBED1O96006 694 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 FYNP06241 537 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 GALTP07902 379 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 KRT17Q04695 432 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 DPYSL3Q14195 570 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 PM20D1Q6GTS8 502 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 MAP7D3Q8IWC1 876 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 NKD2Q969F2 451 aaPredicted RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 GPR62Q9BZJ7 368 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 ZDHHC18Q9NUE0 388 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 STAP1Q9ULZ2 295 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 DRG1Q9Y295 367 aaKnown RBP16.21■□□□□ 0.19
LSM6-201ENST00000296581 USP3Q9Y6I4 520 aa16.21■□□□□ 0.19
LSM6-201ENST00000296581 SF3B1O75533 1304 aaKnown RBP eCLIP16.21■□□□□ 0.188e-6■■■■■ 107
LSM6-201ENST00000296581 COL4A6Q14031 1691 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 YJEFN3A6XGL0 299 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 ZNF487B1APH4 448 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 E7ENQ6 273 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 CST8O60676 142 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 GAS8O95995 478 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 RPL21P46778 160 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 SULT1E1P49888 294 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 BCAR1P56945 870 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 LMNB2Q03252 620 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 ELAVL2Q12926 359 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 PPP1R7Q15435 360 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 DCAF6Q58WW2 860 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 FAM171A1Q5VUB5 890 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 TTC13Q8NBP0 860 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 SLC35B2Q8TB61 432 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 FAM118BQ9BPY3 351 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 CALN1Q9BXU9 219 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 PCDH18Q9HCL0 1135 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 DNPEPQ9ULA0 475 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 OR4Q2P0C623 313 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 USP17L7P0C7H9 530 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 ATXN1P54253 815 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 BYSLQ13895 437 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 OASLQ15646 514 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 NFE2Q16621 373 aaPredicted RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 SLC39A12Q504Y0 691 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 ZC3H12AQ5D1E8 599 aaKnown RBP16.2■□□□□ 0.18
LSM6-201ENST00000296581 ERMARDQ5T6L9 678 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 FUT10Q6P4F1 479 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 ZDHHC24Q6UX98 284 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 RFX6Q8HWS3 928 aa16.2■□□□□ 0.18
LSM6-201ENST00000296581 FUBP3Q96I24 572 aaKnown RBP eCLIP16.2■□□□□ 0.182e-7■■■□□ 16.1
LSM6-201ENST00000296581 OR6C75A6NL08 312 aa16.19■□□□□ 0.18
LSM6-201ENST00000296581 LTFP02788 710 aa16.19■□□□□ 0.18
LSM6-201ENST00000296581 IL4RP24394 825 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms