RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SPECC1L-ADORA2AF8WAN1 911 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 PSMG1O95456 288 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 PDE1BQ01064 536 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 ZPBP2Q6X784 338 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 LRRC74BQ6ZQY2 392 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 POLNQ7Z5Q5 900 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 UNC5BQ8IZJ1 945 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SLC44A1Q8WWI5 657 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 TMEM176AQ96HP8 235 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 PEBP4Q96S96 227 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 PCYT2Q99447 389 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 MMP19Q99542 508 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 MAGEB5Q9BZ81 275 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 ELOVL4Q9GZR5 314 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 IL1RAPL1Q9NZN1 696 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SLC17A6Q9P2U8 582 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SCOCQ9UIL1 159 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 C3orf70A6NLC5 250 aaPredicted RBP13.13□□□□□ -0.31
LIG1-201ENST00000263274 TXNDC9O14530 226 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 KRT38O76015 456 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 HOXC6P09630 235 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 NCF2P19878 526 aaPredicted RBP13.13□□□□□ -0.31
LIG1-201ENST00000263274 GRIA1P42261 906 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SURF1Q15526 300 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 RNF220Q5VTB9 566 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 IER5Q5VY09 327 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 ATG16L1Q676U5 607 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 JADE1Q6IE81 842 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 MPZL3Q6UWV2 235 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 RGS9BPQ6ZS82 235 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG1-201ENST00000263274 PPP1R36Q96LQ0 422 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SPATA33Q96N06 139 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 SYT15Q9BQS2 421 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 TUBB6Q9BUF5 446 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 TMEM134Q9H6X4 195 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 PAPOLBQ9NRJ5 636 aaKnown RBP13.13□□□□□ -0.31
LIG1-201ENST00000263274 SPDYE16A6NNV3 312 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 APOL1O14791 398 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 LGR5O75473 907 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 FARP2O94887 1054 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 NDST1P52848 882 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 RPL10AP62906 217 aaKnown RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 UBAP2LQ14157 1087 aaKnown RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 PPP1R13LQ8WUF5 828 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 FAM172AQ8WUF8 416 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 TEKT4Q8WW24 435 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 HPDLQ96IR7 371 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 TXNDC16Q9P2K2 825 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 CPSF3Q9UKF6 684 aaKnown RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 CORO1CQ9ULV4 474 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 CNTN6Q9UQ52 1028 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 SOCS7O14512 581 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 LYPLA1O75608 230 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 USP1O94782 785 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 PYGLP06737 847 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 F7P08709 466 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 DESP17661 470 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 SAT1P21673 171 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 KCNA3P22001 575 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 SDC4P31431 198 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 PAPOLAP51003 745 aaKnown RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 STX3Q13277 289 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 PPP1R15BQ5SWA1 713 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 CES3Q6UWW8 571 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 ISLR2Q6UXK2 745 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 ACOT1Q86TX2 421 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 C1orf127Q8N9H9 656 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 CCNYQ8ND76 341 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 B3GNT5Q9BYG0 378 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 MINDY3Q9H8M7 445 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 PAK5Q9P286 719 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 WDR35Q9P2L0 1181 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 TSPAN16Q9UKR8 245 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 ADGRA2Q96PE1 1338 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 COL11A2P13942 1736 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 LINGO3P0C6S8 592 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 STAG3L1P0CL83 205 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 RAB27AP51159 221 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 ATXN1P54253 815 aaKnown RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 SLC34A1Q06495 639 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 CA9Q16790 459 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 CFAP157Q5JU67 520 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 GJC2Q5T442 439 aaPredicted RBP13.12□□□□□ -0.31
LIG1-201ENST00000263274 FAM183BPQ6ZVS7 135 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 SLC4A11Q8NBS3 891 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 USP6NLQ92738 828 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 XYLT2Q9H1B5 865 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 PGAP2Q9UHJ9 254 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 LRRC42Q9Y546 428 aa13.12□□□□□ -0.31
LIG1-201ENST00000263274 TCRBV5S1A1TA0A578 114 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 A6NJR5 290 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 MAFO75444 373 aaPredicted RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 DLDP09622 509 aaKnown RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 GMPRP36959 345 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 YWHAZP63104 245 aaKnown RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 MRPS35P82673 323 aaKnown RBP13.11□□□□□ -0.31
LIG1-201ENST00000263274 LAMB3Q13751 1172 aa13.11□□□□□ -0.31
LIG1-201ENST00000263274 PRKD1Q15139 912 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms