RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 M0QYV0 167 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PEX3P56589 373 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 KDSRQ06136 332 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PDIA6Q15084 440 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PAGE2BQ5JRK9 111 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SPATA2LQ8IUW3 424 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ACTRT2Q8TDY3 377 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SDR42E1Q8WUS8 393 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SPIRE2Q8WWL2 714 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ATXN2LQ8WWM7 1075 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 GLMNQ92990 594 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MYDGFQ969H8 173 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 FICDQ9BVA6 458 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 RPAP3Q9H6T3 665 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TBC1D13Q9NVG8 400 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SCAF8Q9UPN6 1271 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 MROH7Q68CQ1 1323 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM120BA0PK00 339 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 HACD1B0YJ81 288 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 USP17L10C9JJH3 530 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM253P0C7T8 217 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ALOX15P16050 662 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ATP6V1C1P21283 382 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 CDK8P49336 464 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 SREBF2Q12772 1141 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PTPAQ15257 358 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF473Q8WTR7 871 aaKnown RBP6.26□□□□□ -1.41
VPS13D-201ENST00000011700 PCDHGB3Q9Y5G1 929 aa6.26□□□□□ -1.41
VPS13D-201ENST00000011700 A0A0X1KG70 313 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MYBL2P10244 700 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CDH18Q13634 790 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 NR1I3Q14994 352 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RGS21Q2M5E4 152 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RFX8Q6ZV50 586 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ARCQ7LC44 396 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SH2D3CQ8N5H7 860 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 USP38Q8NB14 1042 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 AGR3Q8TD06 166 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ZSWIM5Q9P217 1185 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 C3orf18Q9UK00 162 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 UNC13CQ8NB66 2214 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SYNJ2BP-COX16A0A087WUM0 186 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CYP1A1P04798 512 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 LGALS3BPQ08380 585 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 NFE2Q16621 373 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 STRA8Q7Z7C7 330 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DHX40Q8IX18 779 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 LEMD2Q8NC56 503 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PDPRQ8NCN5 879 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MYCBPAPQ8TBZ2 947 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FANCFQ9NPI8 374 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SAMSN1Q9NSI8 373 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 COX16Q9P0S2 106 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MGAT4DA6NG13 374 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ITGA10O75578 1167 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 UBE2R2Q712K3 238 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MASTLQ96GX5 879 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF219Q9P2Y4 722 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TAGLN3Q9UI15 199 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 hCG_1642624A0A1W2PR95 340 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 PI4K2BG5E9Z4 385 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 KCNQ3O43525 872 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SLC11A2P49281 568 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 VBP1P61758 197 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SMCO1Q147U7 214 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 EPHA7Q15375 998 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SNRNP35Q16560 246 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 STRIP1Q5VSL9 837 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DENND1BQ6P3S1 775 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DSG4Q86SJ6 1040 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ERP27Q96DN0 273 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DHX35Q9H5Z1 703 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 HMGXB4Q9UGU5 601 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TRHDEQ9UKU6 1024 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 KDM6BO15054 1643 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FYNP06241 537 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CHN1P15882 459 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RXRBP28702 533 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 GTF2E2P29084 291 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SARSP49591 514 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 BCAT1P54687 386 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SLC7A5Q01650 507 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CHRNA2Q15822 529 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CDO1Q16878 200 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CHMP1BQ7LBR1 199 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CCDC185Q8N715 623 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ATP6V0D2Q8N8Y2 350 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 FAR1Q8WVX9 515 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 MYLPFQ96A32 169 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 KLF6Q99612 283 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 DCLK3Q9C098 648 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 RAB6BQ9NRW1 208 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 CD274Q9NZQ7 290 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 SEC14L4Q9UDX3 406 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 TRIP12Q14669 1992 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 F8W810 466 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 IDH3BO43837 385 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ANXA1P04083 346 aa6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ATP1A1P05023 1023 aaKnown RBP6.25□□□□□ -1.41
VPS13D-201ENST00000011700 ITGAXP20702 1163 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms