RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PIGHQ14442 188 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 PARP6Q2NL67 630 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 CCDC14Q49A88 953 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PPP1R26Q5T8A7 1209 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 USP37Q86T82 979 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 NCAPG2Q86XI2 1143 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PANX3Q96QZ0 392 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 CAMKK2Q96RR4 588 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 H7C0C1 242 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 OGTO15294 1046 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 MAFO75444 373 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 MT-ND3P03897 115 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 CALB1P05937 261 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 ZCCHC18P0CG32 403 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 EIF4BP23588 611 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 CDH5P33151 784 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 ATP5OP48047 213 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 NDST1P52848 882 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 ARFIP2P53365 341 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 STXBP2Q15833 593 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 SLC10A6Q3KNW5 377 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 SLC45A4Q5BKX6 768 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 BSPRYQ5W0U4 402 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 TRIM72Q6ZMU5 477 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 RTKN2Q8IZC4 609 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 ZNF483Q8TF39 744 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 SCG3Q8WXD2 468 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 ATP2A3Q93084 1043 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 FAF2Q96CS3 445 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 KLRG1Q96E93 195 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PPP1R36Q96LQ0 422 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 NIFKQ9BYG3 293 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 GGA3Q9NZ52 723 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 SMG5Q9UPR3 1016 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 SLC15A5A6NIM6 579 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 USP12O75317 370 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 STK10O94804 968 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 PRKCGP05129 697 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PDGFRAP16234 1089 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 SLC25A3Q00325 362 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PTPN11Q06124 597 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 MCL1Q07820 350 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 RASA2Q15283 850 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 CHI3L2Q15782 390 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 UNC5AQ6ZN44 842 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 RSPH3Q86UC2 560 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 NIPA2Q8N8Q9 360 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 HIPK4Q8NE63 616 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 ZMAT2Q96NC0 199 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 LGMNQ99538 433 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 MAN1C1Q9NR34 630 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 DLGAP2Q9P1A6 1054 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 A0A087WZ62 844 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 A0A1B0GUA9 196 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 NUMBP49757 651 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 OXNAD1Q96HP4 312 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 ZNF333Q96JL9 665 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 HEXIM2Q96MH2 286 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 FDXACB1Q9BRP7 624 aaPredicted RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 SLC24A2Q9UI40 661 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 TSPAN16Q9UKR8 245 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 APOC4-APOC2K7ER74 178 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 HAUS5O94927 633 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 APOC2P02655 101 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 UBTFL6P0CB48 400 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 NEFHP12036 1026 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PDIK1LQ8N165 341 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 GSTCDQ8NEC7 633 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ADAM32Q8TC27 787 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TLE6Q9H808 572 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PCDHGC3Q9UN70 934 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 MAD1L1Q9Y6D9 718 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 C2CD4BA6NLJ0 364 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 GYG2O15488 501 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PDE5AO76074 875 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PCK1P35558 622 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 AQP5P55064 265 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ZNF200P98182 395 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 ATF7IP2Q5U623 682 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 LRRC38Q5VT99 294 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ACOT1Q86TX2 421 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 MRPL45Q9BRJ2 306 aaKnown RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 BTBD10Q9BSF8 475 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 UNKQ9C0B0 810 aaKnown RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 EMCNQ9ULC0 261 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 AK5Q9Y6K8 562 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 DOCK1Q14185 1865 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PROZP22891 400 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 HDAC4P56524 1084 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 RPL10AP62906 217 aaKnown RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 NOMO1Q15155 1222 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 DLG2Q15700 870 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 OR6B2Q6IFH4 312 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 SPDYE1Q8NFV5 336 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 PGBD4Q96DM1 585 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 FAM161BQ96MY7 647 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 GPR20Q99678 358 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 PLCD4Q9BRC7 762 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 SNRNP25Q9BV90 132 aaKnown RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 SYNJ2BP-COX16A0A087WUM0 186 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms