RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 VPS16Q9H269 839 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 LHX5Q9H2C1 402 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 C8orf33Q9H7E9 229 aaPredicted RBP19.24■□□□□ 0.67
CLN3-259ENST00000637551 TICRRQ7Z2Z1 1910 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 DCHS1Q96JQ0 3298 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 A0A1W2PQC6 194 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 C2orf78A6NCI8 922 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 MAN2B1O00754 1011 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 SLC9A3R1O14745 358 aaPredicted RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 NARSO43776 548 aaKnown RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 ZBED1O96006 694 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 MAGEA9P43362 315 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 SNX16P57768 344 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 MLF2Q15773 248 aaPredicted RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 CC2D1AQ6P1N0 951 aaPredicted RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 BEND5Q7L4P6 421 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 GPRIN1Q7Z2K8 1008 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 RSPRY1Q96DX4 576 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 FAM83CQ9BQN1 747 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 GANQ9H2C0 597 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 LRRC4Q9HBW1 653 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 TRPC7Q9HCX4 862 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 OLA1Q9NTK5 396 aaKnown RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 GMIPQ9P107 970 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 MYO6Q9UM54 1294 aa19.23■□□□□ 0.67
CLN3-259ENST00000637551 MRPS17Q9Y2R5 130 aaKnown RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 RIF1Q5UIP0 2472 aaKnown RBP19.23■□□□□ 0.67
CLN3-259ENST00000637551 M0QYV0 167 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 TLR5O60602 858 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 RALAP11233 206 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 BRD2P25440 801 aaKnown RBP19.22■□□□□ 0.67
CLN3-259ENST00000637551 GDI1P31150 447 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 GPD2P43304 727 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 AMPD2Q01433 879 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 GOLGA8FQ08AF8 430 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 GOLGA8DPQ0D2H9 430 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 MTF1Q14872 753 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 ARHGAP44Q17R89 818 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 ZNF677Q86XU0 584 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 SIX6OS1Q8N1H7 587 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 ARL14EPQ8N8R7 260 aaPredicted RBP19.22■□□□□ 0.67
CLN3-259ENST00000637551 IQCDQ96DY2 449 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 ZSWIM1Q9BR11 485 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 IER2Q9BTL4 223 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 LSM14BQ9BX40 385 aaKnown RBP19.22■□□□□ 0.67
CLN3-259ENST00000637551 IRF2BPLQ9H1B7 796 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-259ENST00000637551 TBC1D14Q9P2M4 693 aa19.22■□□□□ 0.67
CLN3-259ENST00000637551 E2F8A0AVK6 867 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 F8VZ95 297 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 COCHO43405 550 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 ATP5C1P36542 298 aaKnown RBP19.21■□□□□ 0.67
CLN3-259ENST00000637551 TKTL1P51854 596 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 UBXN1Q04323 297 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 DRAP1Q14919 205 aaPredicted RBP19.21■□□□□ 0.67
CLN3-259ENST00000637551 NFKBIBQ15653 356 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 SLC44A4Q53GD3 710 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 GJB7Q6PEY0 223 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 RALGPS2Q86X27 583 aaPredicted RBP19.21■□□□□ 0.67
CLN3-259ENST00000637551 SIX5Q8N196 739 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 CSGALNACT1Q8TDX6 532 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 OSCP1Q8WVF1 389 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 ATP2A3Q93084 1043 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 EXOC4Q96A65 974 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 NOX5Q96PH1 765 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 SLC22A12Q96S37 553 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 RTN4Q9NQC3 1192 aaKnown RBP19.21■□□□□ 0.67
CLN3-259ENST00000637551 TMEM51Q9NW97 253 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 CEP83Q9Y592 693 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 FHOD1Q9Y613 1164 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 MIA3Q5JRA6 1907 aa19.21■□□□□ 0.67
CLN3-259ENST00000637551 A0A1B0GTH6 734 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 FOXN3O00409 490 aaPredicted RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 CYP26A1O43174 497 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 THAP12O43422 761 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 LSM8O95777 96 aaKnown RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 CFHP08603 1231 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 ATP1A3P13637 1013 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 CDH5P33151 784 aaPredicted RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 JAM2P57087 298 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 SYCP1Q15431 976 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 NEK11Q8NG66 645 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 SH3RF2Q8TEC5 729 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 ATOH1Q92858 354 aaPredicted RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 SECISBP2LQ93073 1101 aaKnown RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 ZFRQ96KR1 1074 aaKnown RBP19.2■□□□□ 0.66
CLN3-259ENST00000637551 LRRC3BQ96PB8 259 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 SLC4A5Q9BY07 1137 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 MFSD1Q9H3U5 465 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 SMOC2Q9H3U7 446 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 CBX8Q9HC52 389 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 DNMT3LQ9UJW3 386 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 CCL26Q9Y258 94 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 DMDP11532 3685 aa19.2■□□□□ 0.66
CLN3-259ENST00000637551 FAM186AA6NE01 2351 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 KRBA1A5PL33 1030 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 PROB1E7EW31 1015 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 GOLGA6L19H0YKK7 550 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 CCDC172P0C7W6 258 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 AOC1P19801 751 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms