RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GRIK1P39086 918 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 PNPLA4P41247 253 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 GRK6P43250 576 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 CSNK1EP49674 416 aaKnown RBP15.51■□□□□ 0.07
CLN3-249ENST00000636685 KIF19Q2TAC6 998 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 GRAMD4Q6IC98 578 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 FAM171BQ6P995 826 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 DDX42Q86XP3 938 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLN3-249ENST00000636685 TMEM86AQ8N2M4 240 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 SYT2Q8N9I0 419 aaPredicted RBP15.51■□□□□ 0.07
CLN3-249ENST00000636685 CADM4Q8NFZ8 388 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 C1orf216Q8TAB5 229 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 BAP1Q92560 729 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 KCNN1Q92952 543 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 MYLPFQ96A32 169 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 PLIN2Q99541 437 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 ARID3AQ99856 593 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 TTLL2Q9BWV7 592 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 SPHK2Q9NRA0 654 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 LARSQ9P2J5 1176 aaKnown RBP15.51■□□□□ 0.07
CLN3-249ENST00000636685 MAGEC2Q9UBF1 373 aaPredicted RBP15.51■□□□□ 0.07
CLN3-249ENST00000636685 AGAP1Q9UPQ3 857 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 PCDHB6Q9Y5E3 794 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 SNX11Q9Y5W9 270 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 METTL12A8MUP2 240 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 PRRT4C9JH25 899 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 K7ENM7 598 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 TULP1O00294 542 aaPredicted RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 PCSK1P29120 753 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 SLC12A3P55017 1021 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 PSMC1P62191 440 aaKnown RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 TLE3Q04726 772 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 SRSF1Q07955 248 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-249ENST00000636685 CCDC173Q0VFZ6 552 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 TAF10Q12962 218 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 IL17AQ16552 155 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 ARSHQ5FYA8 562 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 ADALQ6DHV7 355 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 C4orf50Q6ZRC1 276 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 FMNL3Q8IVF7 1028 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 BBS7Q8IWZ6 715 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 ADGRF2Q8IZF7 708 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 SNIP1Q8TAD8 396 aaKnown RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 GTF3C6Q969F1 213 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 WBP2Q969T9 261 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 OTUB2Q96DC9 234 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 FAM84AQ96KN4 292 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 ZFRQ96KR1 1074 aaKnown RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 RAB34Q9BZG1 259 aa15.5■□□□□ 0.07
CLN3-249ENST00000636685 DNAJC17Q9NVM6 304 aaKnown RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 USP36Q9P275 1121 aaKnown RBP15.5■□□□□ 0.07
CLN3-249ENST00000636685 B8ZZF3 427 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 GABRDO14764 452 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 TRIM66O15016 1216 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 WISP1O95388 367 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 ITGB3P05106 788 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 ANXA13P27216 316 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 PPP3CCP48454 512 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 WNT7BP56706 349 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 SF3A1Q15459 793 aaKnown RBP15.49■□□□□ 0.07
CLN3-249ENST00000636685 ME3Q16798 604 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 VSTM1Q6UX27 236 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 CRELD2Q6UXH1 353 aaPredicted RBP15.49■□□□□ 0.07
CLN3-249ENST00000636685 SCFD1Q8WVM8 642 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 SYT15Q9BQS2 421 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 CRTAC1Q9NQ79 661 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 ITM2CQ9NQX7 267 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 FTSJ1Q9UET6 329 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 AGO2Q9UKV8 859 aaKnown RBP15.49■□□□□ 0.07
CLN3-249ENST00000636685 SNX9Q9Y5X1 595 aa15.49■□□□□ 0.07
CLN3-249ENST00000636685 COL12A1Q99715 3063 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 PLA2G4BP0C869 781 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 PLCG1P19174 1290 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 LMO2P25791 158 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 HNF1BP35680 557 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 LHX1P48742 406 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 TPMTP51580 245 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 TFAMQ00059 246 aaKnown RBP15.48■□□□□ 0.07
CLN3-249ENST00000636685 IL9RQ01113 521 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 CYP27A1Q02318 531 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 IFRD2Q12894 506 aaPredicted RBP15.48■□□□□ 0.07
CLN3-249ENST00000636685 TARDBPQ13148 414 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLN3-249ENST00000636685 RTP5Q14D33 572 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 FUT11Q495W5 492 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 METTL3Q86U44 580 aaKnown RBP15.48■□□□□ 0.07
CLN3-249ENST00000636685 SPACA3Q8IXA5 215 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 MYCT1Q8N699 235 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 C1orf127Q8N9H9 656 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 ENGASEQ8NFI3 743 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 FGF11Q92914 225 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 TRIM9Q9C026 710 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 MKRN2Q9H000 416 aaKnown RBP15.48■□□□□ 0.07
CLN3-249ENST00000636685 SH3BP1Q9Y3L3 701 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 DOPEY2Q9Y3R5 2298 aa15.48■□□□□ 0.07
CLN3-249ENST00000636685 F8VP50 259 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 H0Y8X5 98 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 CBX4O00257 560 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 COCHO43405 550 aa15.47■□□□□ 0.07
CLN3-249ENST00000636685 AFF3P51826 1226 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms