RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 NAGPAQ9UK23 515 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 BZW2Q9Y6E2 419 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 C2orf78A6NCI8 922 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 E5RJQ4 531 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 CKMP06732 381 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 RALAP11233 206 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 TNFAIP3P21580 790 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 TUBP50607 506 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 DAOAP59103 153 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 NOMO3P69849 1222 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 TDRD12Q587J7 1177 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 FAM78AQ5JUQ0 283 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 NAA35Q5VZE5 725 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 E4F1Q66K89 784 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 TADA2BQ86TJ2 420 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 TMEM110Q86TL2 294 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 ERICH1Q86X53 443 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 GJD3Q8N144 294 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 OR8K1Q8NGG5 319 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 NXPE3Q969Y0 559 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 ZSWIM3Q96MP5 696 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 ASB16Q96NS5 453 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 CPXM1Q96SM3 734 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 NACA2Q9H009 215 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 HAUS4Q9H6D7 363 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 ZNHIT6Q9NWK9 470 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 LIMD1Q9UGP4 676 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 C5orf42Q9H799 3197 aa20.07■□□□□ 0.8
SQSTM1-216ENST00000626660 DPYSL4O14531 572 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 GABBR2O75899 941 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 CYP1A1P04798 512 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 SERPING1P05155 500 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 HDCP19113 662 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 WEE1P30291 646 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 YWHAGP61981 247 aaKnown RBP eCLIP20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 VPS36Q86VN1 386 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 CNGA4Q8IV77 575 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 ARID3BQ8IVW6 561 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 DRC7Q8IY82 874 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 E2F7Q96AV8 911 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 CDK5RAP1Q96SZ6 601 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 NMUR1Q9HB89 426 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 TRPV4Q9HBA0 871 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 ZFP14Q9HCL3 533 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 CLIC5Q9NZA1 410 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 IGSF9Q9P2J2 1179 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 MUC3AQ02505 3323 aa20.06■□□□□ 0.8
SQSTM1-216ENST00000626660 AKR1B15C9JRZ8 316 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 TLR5O60602 858 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 MFAP3LO75121 409 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 ADCY5O95622 1261 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 OAS1P00973 400 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 SKILP12757 684 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 RARGP13631 454 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 NSFP46459 744 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 HTR4Q13639 388 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 CLEC16AQ2KHT3 1053 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 PTPN20Q4JDL3 420 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 BTBD8Q5XKL5 378 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 POTEHQ6S545 545 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 SCD5Q86SK9 330 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 SCUBE3Q8IX30 993 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 ARL14EPQ8N8R7 260 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 CPA5Q8WXQ8 436 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 NDRG1Q92597 394 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 NECAB3Q96P71 396 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 TRIM62Q9BVG3 475 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 KIF9Q9HAQ2 790 aa20.05■□□□□ 0.8
SQSTM1-216ENST00000626660 HELZP42694 1942 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 GOLGA6L3A6NEY3 463 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 YJEFN3A6XGL0 299 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 E7ENQ6 273 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 ANHXE9PGG2 379 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 MBL2P11226 248 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 TBX2Q13207 712 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 C10orf120Q5SQS8 335 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 OR6B2Q6IFH4 312 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 PPP1R2P3Q6NXS1 205 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 PARM1Q6UWI2 310 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 RSRC2Q7L4I2 434 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 ZNF571Q7Z3V5 609 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 CELF5Q8N6W0 485 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 RNF139Q8WU17 664 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 FAM149B1Q96BN6 582 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 C18orf8Q96DM3 657 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 CYP2S1Q96SQ9 504 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 PCDHB18PQ96TA0 734 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 DNAJC7Q99615 494 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 KXD1Q9BQD3 176 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 CCSER2Q9H7U1 834 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 ABCC13Q9NSE7 274 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 TDP1Q9NUW8 608 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 NUMBLQ9Y6R0 609 aa20.04■□□□□ 0.8
SQSTM1-216ENST00000626660 PAPSS1O43252 624 aaPredicted RBP20.03■□□□□ 0.8
SQSTM1-216ENST00000626660 COCHO43405 550 aa20.03■□□□□ 0.8
SQSTM1-216ENST00000626660 ECI2O75521 394 aa20.03■□□□□ 0.8
SQSTM1-216ENST00000626660 LTFP02788 710 aa20.03■□□□□ 0.8
SQSTM1-216ENST00000626660 ERBB2P04626 1255 aa20.03■□□□□ 0.8
SQSTM1-216ENST00000626660 CDC25BP30305 580 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms