RNA–Protein interactions for RNA: ENST00000621396.4

CBWD3-216, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-216ENST00000621396 CD48P09326 243 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 NCAM1P13591 858 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 KRT10P13645 584 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 SNX16P57768 344 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 SLC25A11Q02978 314 aaKnown RBP16.66■□□□□ 0.26
CBWD3-216ENST00000621396 ADCY2Q08462 1091 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 GPR17Q13304 367 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 NFE2Q16621 373 aaPredicted RBP16.66■□□□□ 0.26
CBWD3-216ENST00000621396 LONRF2Q1L5Z9 754 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 BHLHA9Q7RTU4 235 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 ZDHHC17Q8IUH5 632 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 FNIP1Q8TF40 1166 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 TBCBQ99426 244 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 CNPY3Q9BT09 278 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 GPATCH2LQ9NWQ4 482 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 USP18Q9UMW8 372 aa16.66■□□□□ 0.26
CBWD3-216ENST00000621396 TNFRSF10BO14763 440 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 RNF8O76064 485 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 CTNNA2P26232 953 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 HDAC4P56524 1084 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 NME3Q13232 169 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 TUBB2AQ13885 445 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 SMC1AQ14683 1233 aaKnown RBP16.65■□□□□ 0.26
CBWD3-216ENST00000621396 KAZNQ674X7 775 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 NIPA2Q8N8Q9 360 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 RAD9AQ99638 391 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 C17orf80Q9BSJ5 609 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 TUBB2BQ9BVA1 445 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 MTRRQ9UBK8 725 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 PCDHB12Q9Y5F1 795 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 PRUNE2Q8WUY3 3088 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 H7C4K7 107 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 PGRMC1O00264 195 aaKnown RBP16.65■□□□□ 0.26
CBWD3-216ENST00000621396 CAPN9O14815 690 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 GLUD2P49448 558 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 EFHC1Q5JVL4 640 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 KLHL7Q8IXQ5 586 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 PIK3R5Q8WYR1 880 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 UBXN4Q92575 508 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 ASNSD1Q9NWL6 643 aa16.65■□□□□ 0.26
CBWD3-216ENST00000621396 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.65■□□□□ 0.26
CBWD3-216ENST00000621396 CTIFO43310 598 aaKnown RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 HSF2BPO75031 334 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 MAN1A1P33908 653 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 MAGEA10P43363 369 aaPredicted RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 SHHQ15465 462 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 FAM131BQ86XD5 332 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 ACTRT1Q8TDG2 376 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 HDAC7Q8WUI4 952 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 CYLDQ9NQC7 956 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 CNGB3Q9NQW8 809 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 MAGED2Q9UNF1 606 aaPredicted RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 LRRD1A4D1F6 860 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 EFCAB8A8MWE9 144 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 KRIT1O00522 736 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 ZMYND10O75800 440 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 ZRANB2O95218 330 aaKnown RBP eCLIP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 SEC24AO95486 1093 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 RALAP11233 206 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 MATKP42679 507 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 DSG1Q02413 1049 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 CKAP4Q07065 602 aaKnown RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 BSPRYQ5W0U4 402 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 SLC8B1Q6J4K2 584 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 MFSD7Q6UXD7 560 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 CYP4V2Q6ZWL3 525 aaPredicted RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 RSRC2Q7L4I2 434 aaKnown RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 RASGEF1CQ8N431 466 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 DDX47Q9H0S4 455 aaKnown RBP16.64■□□□□ 0.25
CBWD3-216ENST00000621396 POPDC2Q9HBU9 364 aa16.64■□□□□ 0.25
CBWD3-216ENST00000621396 PTPRDP23468 1912 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 M0QYT0 321 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 PSTPIP1O43586 416 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 LTFP02788 710 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 KRT1P04264 644 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 RARAP10276 462 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 SULT1E1P49888 294 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 SLC7A5Q01650 507 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 ZC3H12AQ5D1E8 599 aaKnown RBP16.63■□□□□ 0.25
CBWD3-216ENST00000621396 SEL1L2Q5TEA6 688 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 OTUD1Q5VV17 481 aaPredicted RBP16.63■□□□□ 0.25
CBWD3-216ENST00000621396 DDX53Q86TM3 631 aaKnown RBP16.63■□□□□ 0.25
CBWD3-216ENST00000621396 SLC7A14Q8TBB6 771 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 FUBP3Q96I24 572 aaKnown RBP eCLIP16.63■□□□□ 0.25
CBWD3-216ENST00000621396 KRT12Q99456 494 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 CERS4Q9HA82 394 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 NMUR1Q9HB89 426 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 OSER1Q9NX31 292 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 USP3Q9Y6I4 520 aa16.63■□□□□ 0.25
CBWD3-216ENST00000621396 URODP06132 367 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 ATF6P18850 670 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 CTNNB1P35222 781 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 KRT17Q04695 432 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 CA9Q16790 459 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 GOLGA1Q92805 767 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 CLP1Q92989 425 aaKnown RBP16.62■□□□□ 0.25
CBWD3-216ENST00000621396 LRRC1Q9BTT6 524 aa16.62■□□□□ 0.25
CBWD3-216ENST00000621396 DDX23Q9BUQ8 820 aaKnown RBP16.62■□□□□ 0.25
CBWD3-216ENST00000621396 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms