RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 SP100P23497 879 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ADORA2BP29275 332 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 GBP2P32456 591 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PTPN5P54829 565 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 JAM2P57087 298 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 STARD6P59095 220 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CYP27A1Q02318 531 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 UBXN1Q04323 297 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 HTR4Q13639 388 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PPP2R5DQ14738 602 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 DRAP1Q14919 205 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 E2F5Q15329 346 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 TAF12Q16514 161 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ARHGAP44Q17R89 818 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 WHAMMP3Q1A5X7 153 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 MGAT5BQ3V5L5 792 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PKDCCQ504Y2 493 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 FIGNQ5HY92 759 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 STXBP5Q5T5C0 1151 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PPP1R26Q5T8A7 1209 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ARHGAP17Q68EM7 881 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ASTLQ6HA08 431 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 DENND1BQ6P3S1 775 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 TMEM270Q6UE05 265 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CLEC20AQ6ZU45 233 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 GAREM2Q75VX8 874 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 DNAJB7Q7Z6W7 309 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SPATA2LQ8IUW3 424 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 MFSD6LQ8IWD5 586 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SCN4BQ8IWT1 228 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 HOMEZQ8IX15 550 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 FAM71AQ8IYT1 594 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CCDC170Q8IYT3 715 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SYNPOQ8N3V7 929 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SLC44A3Q8N4M1 653 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 TC2NQ8N9U0 490 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 RBBP8NLQ8NC74 664 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PDZD8Q8NEN9 1154 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SHKBP1Q8TBC3 707 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 GOLGA1Q92805 767 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SMARCD2Q92925 531 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 JAKMIP2Q96AA8 810 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 RSPRY1Q96DX4 576 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CYFIP2Q96F07 1278 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 TMEM176AQ96HP8 235 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ZSWIM3Q96MP5 696 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 SEPT5Q99719 369 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 HNRNPABQ99729 332 aaKnown RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 FAM126AQ9BYI3 521 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 EDEM3Q9BZQ6 932 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 TTYH3Q9C0H2 523 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 EPHX3Q9H6B9 360 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 HAUS4Q9H6D7 363 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PLCB1Q9NQ66 1216 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 KRT82Q9NSB4 513 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 FAM207AQ9NSI2 230 aaPredicted RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 THG1LQ9NWX6 298 aaKnown RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CALCOCO1Q9P1Z2 691 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 CYTH4Q9UIA0 394 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 PRDM4Q9UKN5 801 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 MYH10P35580 1976 aa5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF638Q14966 1978 aaKnown RBP5.54□□□□□ -1.52
SHMT1-211ENST00000618902 ANAPC1Q9H1A4 1944 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CTAGE9A4FU28 777 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 SLC38A8A6NNN8 435 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 USP27XA6NNY8 438 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CHADO15335 359 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 AP1G2O75843 785 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 RTN3O95197 1032 aaPredicted RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 ZRANB2O95218 330 aaKnown RBP eCLIP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 IPO7O95373 1038 aaKnown RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 KRT5P13647 590 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 PRLRP16471 622 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CHRNB2P17787 502 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 AOC1P19801 751 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 COL9A1P20849 921 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 TBXAS1P24557 533 aaPredicted RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 RPS9P46781 194 aaKnown RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 TUBP50607 506 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 MAP3K7CLP57077 242 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 SLC8A3P57103 927 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 POLR2FP61218 127 aaKnown RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 GNG11P61952 73 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 YWHAEP62258 255 aaKnown RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CYP4F8P98187 520 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CDK17Q00537 523 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 FCHO2Q0JRZ9 810 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 ARID5BQ14865 1188 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 GOLGA7BQ2TAP0 167 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF528Q3MIS6 628 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 MAP9Q49MG5 647 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 PREPLQ4J6C6 727 aaPredicted RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 ARHGAP29Q52LW3 1261 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 CCDC70Q6NSX1 233 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 ZNF852Q6ZMS4 543 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 RSRC2Q7L4I2 434 aaKnown RBP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 BHLHA9Q7RTU4 235 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 SLC47A2Q86VL8 602 aa5.53□□□□□ -1.52
SHMT1-211ENST00000618902 DDX42Q86XP3 938 aaKnown RBP eCLIP5.53□□□□□ -1.52
SHMT1-211ENST00000618902 TMEM139Q8IV31 216 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms