RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 GPR75-ASB3A0A0A6YYF3 556 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 TCRBV16S1A1N1A0A5B0 115 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 C5orf67F2Z3F1 127 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MTSS1O43312 755 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 FLOT1O75955 427 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 PDE8BO95263 885 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 CXCL10P02778 98 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 PRB1P04280 392 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 RB1P06400 928 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 DCNP07585 359 aaKnown RBP5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MYL3P08590 195 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 PLA2G2AP14555 144 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ZNF37AP17032 561 aaPredicted RBP5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MCAMP43121 646 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 KIF11P52732 1056 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 BCAR1P56945 870 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 LMOD3Q0VAK6 560 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 CAMK1Q14012 370 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 COL28A1Q2UY09 1125 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 TMEM63BQ5T3F8 832 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 PRAMEF9Q5VWM5 478 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 C16orf86Q6ZW13 317 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ARMCX2Q7L311 632 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 TEX11Q8IYF3 940 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 LILRB2Q8N423 598 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ATRIPQ8WXE1 791 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 RUNDC1Q96C34 613 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MYEOVQ96EZ4 313 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 NEK1Q96PY6 1258 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 HAPLN2Q9GZV7 340 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ACSS2Q9NR19 701 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 HOMER2Q9NSB8 354 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ABCF2Q9UG63 623 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 SFMBT1Q9UHJ3 866 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 TCEAL9Q9UHQ7 104 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 CDH22Q9UJ99 828 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 CENPVL1A0A0U1RR11 272 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 PER2O15055 1255 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 MAFGO15525 162 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 STC2O76061 302 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 HNRNPLP14866 589 aaKnown RBP eCLIP5.12□□□□□ -1.592e-22■■■■■ 66.9
LINC00540-201ENST00000611481 ZFP36P26651 326 aaKnown RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 PPP2R1AP30153 589 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 BMPR1AP36894 532 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 KRTAP10-11P60412 298 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 PUM3Q15397 648 aaKnown RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 LPAL2Q16609 132 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 ABHD17CQ6PCB6 329 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 Q6YL49 198 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 TSHZ1Q6ZSZ6 1077 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 CXorf67Q86X51 503 aaPredicted RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 FOXP4Q8IVH2 680 aaPredicted RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 VGLL2Q8N8G2 317 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 CAGE1Q8TC20 777 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 TUBGCP5Q96RT8 1024 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 RPS6KC1Q96S38 1066 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 DNAJC7Q99615 494 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 SLC46A2Q9BY10 475 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 EPC1Q9H2F5 836 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 DHX36Q9H2U1 1008 aaKnown RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 TMEM260Q9NX78 707 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 EIF2B4Q9UI10 523 aaKnown RBP5.12□□□□□ -1.59
LINC00540-201ENST00000611481 COX11Q9Y6N1 276 aa5.12□□□□□ -1.59
LINC00540-201ENST00000611481 ITPR1Q14643 2758 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 ASXL3Q9C0F0 2248 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 MYO9AB2RTY4 2548 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 HOXA3O43365 443 aaPredicted RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 TOP3BO95985 862 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 CYP17A1P05093 508 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 CDK4P11802 303 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 FGFR2P21802 821 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 DNAJB1P25685 340 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 EXOSC10Q01780 885 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 PTGISQ16647 500 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 MAN2A1Q16706 1144 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 CCDC30Q5VVM6 783 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 IQSEC1Q6DN90 963 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 GLCCI1Q86VQ1 547 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 MAPKAPK5Q8IW41 473 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 MAML2Q8IZL2 1156 aaPredicted RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 TDRD5Q8NAT2 981 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 VN1R2Q8NFZ6 395 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 CPPED1Q9BRF8 314 aaPredicted RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 PDCD2LQ9BRP1 358 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 MTG1Q9BT17 334 aaPredicted RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 OSBPL6Q9BZF3 934 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 S1PR5Q9H228 398 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 PNNQ9H307 717 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 SERHL2Q9H4I8 314 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 ZNF768Q9H5H4 540 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 POMKQ9H5K3 350 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 TLE6Q9H808 572 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 KANSL2Q9H9L4 492 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 TBC1D17Q9HA65 648 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 GNL3LQ9NVN8 582 aaKnown RBP5.11□□□□□ -1.59
LINC00540-201ENST00000611481 PCDHGA2Q9Y5H1 932 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 RAI2Q9Y5P3 530 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 TENM4Q6N022 2769 aa5.11□□□□□ -1.59
LINC00540-201ENST00000611481 AHRRA9YTQ3 701 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 INO80B-WBP1J3KQ70 363 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms