RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NDUFS2O75306 463 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 GABBR2O75899 941 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 HOXB2P14652 356 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TNNI1P19237 187 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 BCKDHBP21953 392 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 ITPKAP23677 461 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 OXTRP30559 389 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 STAT6P42226 847 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 PTGER3P43115 390 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 ZNF33AQ06730 810 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TAF10Q12962 218 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SUZ12Q15022 739 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 SF3A1Q15459 793 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 TRIP6Q15654 476 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 LY6G5CQ5SRR4 150 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 C10orf76Q5T2E6 689 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SNX30Q5VWJ9 437 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 GRAMD4Q6IC98 578 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 ARMCX6Q7L4S7 300 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 DYMQ7RTS9 669 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TRAPPC11Q7Z392 1133 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TADA2BQ86TJ2 420 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 METTL3Q86U44 580 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 PROSER1Q86XN7 944 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 CHPFQ8IZ52 775 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 MINDY1Q8N5J2 469 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TERB1Q8NA31 727 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 OR6B3Q8NGW1 331 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 CXorf38Q8TB03 319 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 GOLGA5Q8TBA6 731 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 LRRC15Q8TF66 581 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 NOC3LQ8WTT2 800 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 PTCD2Q8WV60 388 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 UCMAQ8WVF2 138 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SCFD1Q8WVM8 642 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 KBTBD7Q8WVZ9 684 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 FBXO32Q969P5 355 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SYAP1Q96A49 352 aaPredicted RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 DNAJC19Q96DA6 116 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SAAL1Q96ER3 474 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 PCED1BQ96HM7 432 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 TMX3Q96JJ7 454 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 CDK5RAP1Q96SZ6 601 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 TNMDQ9H2S6 317 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 FBXO44Q9H4M3 255 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 CAPN10Q9HC96 672 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 PDE11AQ9HCR9 933 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 DMAP1Q9NPF5 467 aaPredicted RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 SPHK2Q9NRA0 654 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 PANK4Q9NVE7 773 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 INVSQ9Y283 1065 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 ZNF510Q9Y2H8 683 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SRPRBQ9Y5M8 271 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 MORC2Q9Y6X9 1032 aaPredicted RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 UBE4BO95155 1302 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 ZNF462Q96JM2 2506 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 BPTFQ12830 3046 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 NAV2Q8IVL1 2488 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 FRMD3A2A2Y4 597 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 TISP43B9A030 160 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 TULP3O75386 442 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 CER1O95813 267 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 PDGFRBP09619 1106 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 ZNF883P0CG24 379 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 PTPN1P18031 435 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 HOXC13P31276 330 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 PSMC1P62191 440 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 RING1Q06587 406 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 ANO4Q32M45 955 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 PLEKHG6Q3KR16 790 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 WDR72Q3MJ13 1102 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 MDH1BQ5I0G3 518 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 NAIF1Q69YI7 327 aaPredicted RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 KIAA1211LQ6NV74 962 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 RAB44Q7Z6P3 723 aaPredicted RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 OSTM1Q86WC4 334 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 ETFBKMTQ8IXQ9 262 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 RGL4Q8IZJ4 473 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 GALNT15Q8N3T1 639 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 XXYLT1Q8NBI6 393 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 B3GALNT2Q8NCR0 500 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 CADM4Q8NFZ8 388 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 RLN3Q8WXF3 142 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 ADAMTS14Q8WXS8 1223 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 SMARCD1Q96GM5 515 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 ZNF419Q96HQ0 510 aaPredicted RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 CDC6Q99741 560 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 CBWD1Q9BRT8 395 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 REPIN1Q9BWE0 567 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 RNF38Q9H0F5 515 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 PCED1AQ9H1Q7 454 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 CCDC86Q9H6F5 360 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 MAGEF1Q9HAY2 307 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 CRTAC1Q9NQ79 661 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 TLR8Q9NR97 1041 aaKnown RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 POLR3BQ9NW08 1133 aaPredicted RBP6.67□□□□□ -1.34
CUX1-220ENST00000607092 SMPD4Q9NXE4 827 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 HSPBP1Q9NZL4 362 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 MARK1Q9P0L2 795 aa6.67□□□□□ -1.34
CUX1-220ENST00000607092 KIAA1522Q9P206 1035 aaPredicted RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms