RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 KLK13Q9UKR3 277 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 HCN2Q9UL51 889 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 PCDHB13Q9Y5F0 798 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SRPRBQ9Y5M8 271 aaKnown RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 NBPF19A0A087WUL8 3843 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 FRMD3A2A2Y4 597 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF233A6NK53 670 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 COCHO43405 550 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 CLSTN1O94985 981 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 OAS1P00973 400 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 APODP05090 189 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 CFIP05156 583 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ADH5P11766 374 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 WARSP23381 471 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ABCD1P33897 745 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 GNL1P36915 607 aaPredicted RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 CDH8P55286 799 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 MYL6P60660 151 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 SIM1P81133 766 aaPredicted RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 POU5F1Q01860 360 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 SRSF1Q07955 248 aaKnown RBP eCLIP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 MYO1EQ12965 1108 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 DUOXA2Q1HG44 320 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 MAP7D1Q3KQU3 841 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 VSTM1Q6UX27 236 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 BBS7Q8IWZ6 715 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 PHTF2Q8N3S3 785 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 SPATA18Q8TC71 538 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ZNF516Q92618 1163 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ZFRQ96KR1 1074 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 CAMK1GQ96NX5 476 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 PNKPQ96T60 521 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 ACOX2Q99424 681 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 TTLL2Q9BWV7 592 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 GZF1Q9H116 711 aaPredicted RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 SNX25Q9H3E2 840 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 SMYD3Q9H7B4 428 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 NXF1Q9UBU9 619 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 R3HCC1Q9Y3T6 440 aaKnown RBP9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 MGAQ8IWI9 3026 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 COL6A6A6NMZ7 2263 aa9.2□□□□□ -0.94
SHKBP1-220ENST00000599716 FBN2P35556 2912 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 FAM221BA6H8Z2 402 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 A8MXQ7 604 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TGFB1I1O43294 461 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 OLFM2O95897 454 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TBX18O95935 607 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TCF3P15923 654 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 PTPN1P18031 435 aaKnown RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 GABRG2P18507 467 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TNNI1P19237 187 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC7A9P82251 487 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 MRPS21P82921 87 aaKnown RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 WDR72Q3MJ13 1102 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 FOXD4L5Q5VV16 416 aaPredicted RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TDRD10Q5VZ19 366 aaKnown RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 LYSMD4Q5XG99 296 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 EGFLAMQ63HQ2 1017 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 LPCAT2Q7L5N7 544 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TMEM25Q86YD3 366 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 PLEKHO2Q8TD55 490 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 WHAMMQ8TF30 809 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 FOXD4L4Q8WXT5 416 aaPredicted RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC39A7Q92504 469 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 BHMTQ93088 406 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 FBXO32Q969P5 355 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 EXOC4Q96A65 974 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 JAKMIP2Q96AA8 810 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 C8orf48Q96LL4 319 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 SDCBP2Q9H190 292 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 CLMPQ9H6B4 373 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 GMIPQ9P107 970 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 CALCOCO1Q9P1Z2 691 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 RAD54BQ9Y620 910 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 MYH10P35580 1976 aa9.19□□□□□ -0.94
SHKBP1-220ENST00000599716 TBC1D3BA6NDS4 549 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 TRIM66O15016 1216 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 MDM4O15151 490 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 TULP3O75386 442 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 BEST1O76090 585 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 ALDH1A2O94788 518 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC130P13994 396 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 SYT1P21579 422 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 YWHAQP27348 245 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 TXLNAP40222 546 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 GRIA2P42262 883 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 NOP14P78316 857 aaKnown RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 RPL6Q02878 288 aaKnown RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CYP24A1Q07973 514 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 SNRNP35Q16560 246 aaKnown RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 ANO4Q32M45 955 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 FOXD4L6Q3SYB3 417 aaPredicted RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 C10orf76Q5T2E6 689 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 FOXD4L3Q6VB84 417 aaPredicted RBP9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC73Q6ZRK6 1079 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 TPGS1Q6ZTW0 290 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 TOGARAM2Q6ZUX3 1019 aa9.18□□□□□ -0.94
SHKBP1-220ENST00000599716 PAQR9Q6ZVX9 377 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms