RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 HOXA6P31267 233 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 PXNP49023 591 aaPredicted RBP13.78□□□□□ -0.2
LIG1-212ENST00000596549 AMPD2Q01433 879 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 MORC3Q14149 939 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 WDR5BQ86VZ2 330 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 DDX42Q86XP3 938 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIG1-212ENST00000596549 BBS7Q8IWZ6 715 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 ADGRG2Q8IZP9 1017 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 DHTKD1Q96HY7 919 aaPredicted RBP13.78□□□□□ -0.2
LIG1-212ENST00000596549 FBXO44Q9H4M3 255 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 PARD6AQ9NPB6 346 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 ARMCX3Q9UH62 379 aaPredicted RBP13.78□□□□□ -0.2
LIG1-212ENST00000596549 HOOK1Q9UJC3 728 aaKnown RBP13.78□□□□□ -0.2
LIG1-212ENST00000596549 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
LIG1-212ENST00000596549 CTNND2Q9UQB3 1225 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 SCML2Q9UQR0 700 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 GPR179Q6PRD1 2367 aa13.78□□□□□ -0.2
LIG1-212ENST00000596549 A0A1W2PQH9 124 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 E2F8A0AVK6 867 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 MUC22E2RYF6 1773 aaPredicted RBP13.77□□□□□ -0.21
LIG1-212ENST00000596549 K7EQS6 105 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 BIN1O00499 593 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 MDM4O15151 490 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TBX18O95935 607 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 IRF1P10914 325 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TGM1P22735 817 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 KIF11P52732 1056 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 CUL2Q13617 745 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 FBXO43Q4G163 708 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 ARHGAP17Q68EM7 881 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 KLHL10Q6JEL2 608 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 RHBDF2Q6PJF5 856 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 SCD5Q86SK9 330 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TTC30AQ86WT1 665 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 PHTF2Q8N3S3 785 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TMEM176AQ96HP8 235 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 CEP63Q96MT8 703 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 HHIPQ96QV1 700 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 DUSP16Q9BY84 665 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TLR8Q9NR97 1041 aaKnown RBP13.77□□□□□ -0.21
LIG1-212ENST00000596549 USP3Q9Y6I4 520 aa13.77□□□□□ -0.21
LIG1-212ENST00000596549 TULP2O00295 520 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 SLC9A3R1O14745 358 aaPredicted RBP13.76□□□□□ -0.21
LIG1-212ENST00000596549 ADH5P11766 374 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 TRIM21P19474 475 aaKnown RBP13.76□□□□□ -0.21
LIG1-212ENST00000596549 SLC6A11P48066 632 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 FMO5P49326 533 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 LRMPQ12912 555 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 NR1H3Q13133 447 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 STIM1Q13586 685 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 LY6G5CQ5SRR4 150 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 PRR23BQ6ZRT6 265 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 SYT13Q7L8C5 426 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 CCDC186Q7Z3E2 898 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 ETFBKMTQ8IXQ9 262 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 NELFBQ8WX92 580 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 RMDN1Q96DB5 314 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 KLF16Q9BXK1 252 aaPredicted RBP13.76□□□□□ -0.21
LIG1-212ENST00000596549 GTPBP4Q9BZE4 634 aaKnown RBP13.76□□□□□ -0.21
LIG1-212ENST00000596549 FAM124BQ9H5Z6 455 aaPredicted RBP13.76□□□□□ -0.21
LIG1-212ENST00000596549 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIG1-212ENST00000596549 NUDT5Q9UKK9 219 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 SH3BP1Q9Y3L3 701 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 NUP205Q92621 2012 aa13.76□□□□□ -0.21
LIG1-212ENST00000596549 CEP192Q8TEP8 1941 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 ATG13O75143 517 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 ADH1CP00326 375 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 CNR2P34972 360 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 EIF2DP41214 584 aaKnown RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 PPP1R2P41236 205 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 SEC13P55735 322 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 STX17P56962 302 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 KDSRQ06136 332 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 SIM2Q14190 667 aaPredicted RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 DMC1Q14565 340 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 GOLGA7BQ2TAP0 167 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 RAB41Q5JT25 222 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 LAIR1Q6GTX8 287 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 FOXR2Q6PJQ5 311 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 BHLHA9Q7RTU4 235 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 PIGZQ86VD9 579 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 TTC39CQ8N584 583 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 LMO3Q8TAP4 145 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 USP33Q8TEY7 942 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 KAT5Q92993 513 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 EXOC4Q96A65 974 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 OTUB2Q96DC9 234 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 HEXIM2Q96MH2 286 aaKnown RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 NACA2Q9H009 215 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 METTL14Q9HCE5 456 aaKnown RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 TBC1D14Q9P2M4 693 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 TSPAN16Q9UKR8 245 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 SLC8A2Q9UPR5 921 aa13.75□□□□□ -0.21
LIG1-212ENST00000596549 NYNRINQ9P2P1 1898 aaKnown RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 EP300Q09472 2414 aaPredicted RBP13.75□□□□□ -0.21
LIG1-212ENST00000596549 SPTBN4Q9H254 2564 aa13.74□□□□□ -0.21
LIG1-212ENST00000596549 CCDC163A0A0D9SF12 145 aa13.74□□□□□ -0.21
LIG1-212ENST00000596549 HOXC11O43248 304 aaPredicted RBP13.74□□□□□ -0.21
LIG1-212ENST00000596549 RARGP13631 454 aa13.74□□□□□ -0.21
LIG1-212ENST00000596549 HNRNPLP14866 589 aaKnown RBP eCLIP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms