RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SH3RF2Q8TEC5 729 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 ZNF606Q8WXB4 792 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 SECISBP2LQ93073 1101 aaKnown RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 MSANTD3Q96H12 275 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 CDK5RAP1Q96SZ6 601 aaKnown RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 FAM83CQ9BQN1 747 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 NAA15Q9BXJ9 866 aaKnown RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 NACA2Q9H009 215 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 CCSER2Q9H7U1 834 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 TBC1D17Q9HA65 648 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 LRRC4Q9HBW1 653 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 HEBP1Q9NRV9 189 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 CLIC5Q9NZA1 410 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 NAGPAQ9UK23 515 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 AJAP1Q9UKB5 411 aaPredicted RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 FHOD1Q9Y613 1164 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 CPQQ9Y646 472 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 A0A1W2PQH9 124 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 LEFTY2O00292 366 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 FOXN3O00409 490 aaPredicted RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 CALCAP01258 141 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ATP5C1P36542 298 aaKnown RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 PGFP49763 221 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 TPM4P67936 248 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ZXDBP98169 803 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ADIGQ0VDE8 80 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 DRAP1Q14919 205 aaPredicted RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 PDGFRLQ15198 375 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 IER5LQ5T953 404 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 CWF19L1Q69YN2 538 aaKnown RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 PMF1Q6P1K2 205 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 TPRG1Q6ZUI0 275 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 FLCNQ8NFG4 579 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 RIN3Q8TB24 985 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 STK32AQ8WU08 396 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 OSCP1Q8WVF1 389 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ZFYVE19Q96K21 471 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 HSFY1Q96LI6 401 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ERGIC2Q96RQ1 377 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 DDX23Q9BUQ8 820 aaKnown RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 STK33Q9BYT3 514 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 ULBP1Q9BZM6 244 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 GANQ9H2C0 597 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 CNGB3Q9NQW8 809 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 GKN1Q9NS71 199 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 FAM207AQ9NSI2 230 aaPredicted RBP12.51□□□□□ -0.41
LIG3-213ENST00000590630 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.51□□□□□ -0.41
LIG3-213ENST00000590630 OSER1Q9NX31 292 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 SMPD4Q9NXE4 827 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 SIK3Q9Y2K2 1263 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 PIAS3Q9Y6X2 628 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 MUC6Q6W4X9 2439 aa12.51□□□□□ -0.41
LIG3-213ENST00000590630 KANSL1LA0AUZ9 987 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 F8VZ95 297 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 STK25O00506 426 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 MAN2B1O00754 1011 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 RALAP11233 206 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 RARGP13631 454 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 AOC1P19801 751 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 CLCN1P35523 988 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 GPD2P43304 727 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 YWHAGP61981 247 aaKnown RBP eCLIP12.5□□□□□ -0.41
LIG3-213ENST00000590630 GOLGA8FQ08AF8 430 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 GOLGA8DPQ0D2H9 430 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 SYCP1Q15431 976 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 NFKBIBQ15653 356 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 ITPRIPL2Q3MIP1 535 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 ZNF852Q6ZMS4 543 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 SCD5Q86SK9 330 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 TTC16Q8NEE8 873 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 ATP2A3Q93084 1043 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 ZFRQ96KR1 1074 aaKnown RBP12.5□□□□□ -0.41
LIG3-213ENST00000590630 NELL2Q99435 816 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 C8orf33Q9H7E9 229 aaPredicted RBP12.5□□□□□ -0.41
LIG3-213ENST00000590630 NMUR1Q9HB89 426 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 CBX8Q9HC52 389 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 ACP6Q9NPH0 428 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 DUS2Q9NX74 493 aaKnown RBP12.5□□□□□ -0.41
LIG3-213ENST00000590630 GTSE1Q9NYZ3 720 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 DNMT3LQ9UJW3 386 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 PCDHGC3Q9UN70 934 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 MRPS17Q9Y2R5 130 aaKnown RBP12.5□□□□□ -0.41
LIG3-213ENST00000590630 COL4A3Q01955 1670 aa12.5□□□□□ -0.41
LIG3-213ENST00000590630 MYOFQ9NZM1 2061 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 E2F8A0AVK6 867 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 SLC9A3R1O14745 358 aaPredicted RBP12.49□□□□□ -0.41
LIG3-213ENST00000590630 FBXO21O94952 628 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 PNMA6AP0CW24 399 aaPredicted RBP12.49□□□□□ -0.41
LIG3-213ENST00000590630 LCP1P13796 627 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 AVPR2P30518 371 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 KRT9P35527 623 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 ACADSBP45954 432 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 IFNAR2P48551 515 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 RPL34P49207 117 aaKnown RBP12.49□□□□□ -0.41
LIG3-213ENST00000590630 RGS7P49802 495 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 KLK7P49862 253 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 KPNA1P52294 538 aaPredicted RBP12.49□□□□□ -0.41
LIG3-213ENST00000590630 POLR2FP61218 127 aaKnown RBP12.49□□□□□ -0.41
LIG3-213ENST00000590630 TNK2Q07912 1038 aa12.49□□□□□ -0.41
LIG3-213ENST00000590630 RUNX3Q13761 415 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms