RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RELL1Q8IUW5 271 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 THEM5Q8N1Q8 247 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 URGCPQ8TCY9 931 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 ZNF296Q8WUU4 475 aaPredicted RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 ARL8AQ96BM9 186 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 SMARCD1Q96GM5 515 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 RNF157Q96PX1 679 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 FAM118BQ9BPY3 351 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 KRT82Q9NSB4 513 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 KANSL3Q9P2N6 904 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 STAP1Q9ULZ2 295 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 SMAPO00193 183 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 DNALI1O14645 258 aaPredicted RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 TP73O15350 636 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 CD48P09326 243 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 ZFXP17010 805 aaPredicted RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 TYMPP19971 482 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 TGM2P21980 687 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 STIP1P31948 543 aaKnown RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 NOS2P35228 1153 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 GYS2P54840 703 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 DYNLT1P63172 113 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 MORF4L2Q15014 288 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 HIBCHQ6NVY1 386 aaPredicted RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 P3H4Q92791 437 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 SNRNP25Q9BV90 132 aaKnown RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 TMEM109Q9BVC6 243 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.81□□□□□ -0.04
LIG3-205ENST00000585941 CNGB3Q9NQW8 809 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 INPP5FQ9Y2H2 1132 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 CLDN5O00501 218 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 AP1G2O75843 785 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 SELPP16109 830 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 VPS41P49754 854 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 MAP3K7CLP57077 242 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 EIF3EP60228 445 aaKnown RBP14.8□□□□□ -0.04
LIG3-205ENST00000585941 ADCY1Q08828 1119 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 NOMO1Q15155 1222 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 DPYSL2Q16555 572 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 P3H1Q32P28 736 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 KIAA0319Q5VV43 1072 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 CCDC25Q86WR0 208 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 ZCCHC9Q8N567 271 aaKnown RBP14.8□□□□□ -0.04
LIG3-205ENST00000585941 ARFGAP2Q8N6H7 521 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 CLEC4CQ8WTT0 213 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 RSAD2Q8WXG1 361 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 RSPH1Q8WYR4 309 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 FAM149B1Q96BN6 582 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 ZBTB9Q96C00 473 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 HAUS1Q96CS2 278 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 FAF2Q96CS3 445 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 PCED1BQ96HM7 432 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 SUSD3Q96L08 255 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 PAAF1Q9BRP4 392 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 EPB41L4BQ9H329 900 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 SEMA4AQ9H3S1 761 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 PCDH18Q9HCL0 1135 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 RRN3Q9NYV6 651 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.8□□□□□ -0.04
LIG3-205ENST00000585941 RCOR3Q9P2K3 495 aaPredicted RBP14.8□□□□□ -0.04
LIG3-205ENST00000585941 CACNG4Q9UBN1 327 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 TPX2Q9ULW0 747 aaKnown RBP14.8□□□□□ -0.04
LIG3-205ENST00000585941 SHOC2Q9UQ13 582 aa14.8□□□□□ -0.04
LIG3-205ENST00000585941 CFAP69A5D8W1 941 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 TMEM189-UBE2V1I3L0A0 370 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 DNM1LO00429 736 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 APOL1O14791 398 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 RIPK2O43353 540 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 TKTL1P51854 596 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 GPS1Q13098 491 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 KCTD19Q17RG1 926 aaPredicted RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 KRT71Q3SY84 523 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 INTS6LQ5JSJ4 861 aaKnown RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 RAB41Q5JT25 222 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 FAM171BQ6P995 826 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 LRRC8DQ7L1W4 858 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 NT5C3BQ969T7 300 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 SLC2A13Q96QE2 648 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 TMEM121Q9BTD3 319 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 TRIM62Q9BVG3 475 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 ROPN1BQ9BZX4 212 aaPredicted RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 PHACTR1Q9C0D0 580 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 STMN4Q9H169 189 aaPredicted RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 ROPN1Q9HAT0 212 aaPredicted RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 POPDC2Q9HBU9 364 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 CSNK1G1Q9HCP0 422 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 PNPLA8Q9NP80 782 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 PCDHB8Q9UN66 801 aa14.79□□□□□ -0.04
LIG3-205ENST00000585941 TIMM13Q9Y5L4 95 aaPredicted RBP14.79□□□□□ -0.04
LIG3-205ENST00000585941 MYBPHLA2RUH7 354 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 IGFBP6P24592 240 aaPredicted RBP14.78□□□□□ -0.04
LIG3-205ENST00000585941 LMAN1P49257 510 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 CDK7P50613 346 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 AIF1P55008 147 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 SKOR1P84550 965 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 TSPY1Q01534 308 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 ROR1Q01973 937 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 SLC29A2Q14542 456 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 MBTPS1Q14703 1052 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 ANKRD20A8PQ5CZ79 823 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms