RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	USP10	Q14694	798 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	UBXN2B	Q14CS0	331 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ZNF750	Q32MQ0	723 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ZIK1	Q3SY52	487 aa	Predicted RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	GALNTL6	Q49A17	601 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	TTC22	Q5TAA0	569 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	CACHD1	Q5VU97	1274 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	SNX30	Q5VWJ9	437 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	FAM160B1	Q5W0V3	765 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	GALNT4	Q8N4A0	578 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	AOPEP	Q8N6M6	819 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ANKRD53	Q8N9V6	530 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	CREB3L4	Q8TEY5	395 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	TBC1D22A	Q8WUA7	517 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	SCAMP4	Q969E2	229 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	PPP2R3C	Q969Q6	453 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	APOPT1	Q96IL0	206 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	KLHL32	Q96NJ5	620 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	CARD11	Q9BXL7	1154 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	TTYH3	Q9C0H2	523 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	KIAA1683	Q9H0B3	1180 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	MEGF9	Q9H1U4	602 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	PDCL3	Q9H2J4	239 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	IL21R	Q9HBE5	538 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	CD248	Q9HCU0	757 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	G6PC2	Q9NQR9	355 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	TMOD4	Q9NZQ9	345 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	DNMT3B	Q9UBC3	853 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ADD3	Q9UEY8	706 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	HSF4	Q9ULV5	492 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	C19orf53	Q9UNZ5	99 aa	Predicted RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	NAALADL1	Q9UQQ1	740 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	FER1L4	A9Z1Z3	1794 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	THOC2	Q8NI27	1593 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	VWA3A	A6NCI4	1184 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	C1QTNF3-AMACR	E9PGA6	284 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595		H3BNC9	293 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	DCLK1	O15075	740 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	ZSCAN9	O15535	394 aa	Predicted RBP	5.41	□□□□□ -1.54
SS18-223	ENST00000583595	KLK10	O43240	276 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	TAF5L	O75529	589 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PIAS2	O75928	621 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	TMEM63A	O94886	807 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	RASAL1	O95294	804 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	VIP	P01282	170 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CYP21A2	P08686	494 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	SLC6A2	P23975	617 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CHM	P24386	653 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	ADCY7	P51828	1080 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	RRAD	P55042	308 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PDCL	Q13371	301 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CUL4A	Q13619	759 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	FHL3	Q13643	280 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	ATP1A4	Q13733	1029 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	ANKRD1	Q15327	319 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	BAK1	Q16611	211 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	INSC	Q1MX18	579 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PTCHD3	Q3KNS1	767 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	RILPL1	Q5EBL4	403 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	KRT40	Q6A162	431 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.41	□□□□□ -1.54
SS18-223	ENST00000583595	TMTC3	Q6ZXV5	915 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	H1FNT	Q75WM6	255 aa	Predicted RBP	5.41	□□□□□ -1.54
SS18-223	ENST00000583595	GAS2L3	Q86XJ1	694 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CMTM4	Q8IZR5	234 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CNPY4	Q8N129	248 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	MCRS1	Q96EZ8	462 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	FAM227B	Q96M60	508 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	ENKD1	Q9H0I2	346 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	SLC25A32	Q9H2D1	315 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	SEC61A2	Q9H9S3	476 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PI4KB	Q9UBF8	816 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	CNTN6	Q9UQ52	1028 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PSAT1	Q9Y617	370 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PIAS3	Q9Y6X2	628 aa		5.41	□□□□□ -1.54
SS18-223	ENST00000583595	PABPN1L	A6NDY0	278 aa	Known RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	OR2W5	A6NFC9	320 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A20P	A6NIJ5	464 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	PATE3	B3GLJ2	98 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	AP3D1	O14617	1153 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	CCP110	O43303	1012 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	RGS10	O43665	173 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	CCNT2	O60583	730 aa	Known RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	HAUS5	O94927	633 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	STARD3NL	O95772	234 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	POMC	P01189	267 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	AMH	P03971	560 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	JUN	P05412	331 aa	Known RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	VSIG10L2	P0DP72	767 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	XRCC6	P12956	609 aa	Known RBP eCLIP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	POR	P16435	677 aa	Predicted RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	YY1	P25490	414 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	SERPINA4	P29622	427 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	PGM1	P36871	562 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	ETV4	P43268	484 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	GZMK	P49863	264 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	TOB1	P50616	345 aa	Predicted RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	WNT3	P56703	355 aa		5.4	□□□□□ -1.54
SS18-223	ENST00000583595	IFI35	P80217	286 aa	Predicted RBP	5.4	□□□□□ -1.54
SS18-223	ENST00000583595	TDG	Q13569	410 aa		5.4	□□□□□ -1.54

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