RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RBMXL2O75526 392 aaKnown RBP7.54□□□□□ -1.2
SS18-214ENST00000580003 FGAP02671 866 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 MYL4P12829 197 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 NTSR1P30989 418 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 CLEC9AQ6UXN8 241 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 CATSPERGQ6ZRH7 1159 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 C11orf44Q8N8P7 122 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 ZDHHC12Q96GR4 267 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 FAM227BQ96M60 508 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 ADARB2Q9NS39 739 aaKnown RBP7.54□□□□□ -1.2
SS18-214ENST00000580003 RIMKLBQ9ULI2 386 aa7.54□□□□□ -1.2
SS18-214ENST00000580003 A0A1W2PPC4 97 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 LINC01548A6NM66 108 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 H7C1Q1 480 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 AGPSO00116 658 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 FPR3P25089 353 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 AK2P54819 239 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 SLC10A2Q12908 348 aaPredicted RBP7.53□□□□□ -1.2
SS18-214ENST00000580003 CCDC142Q17RM4 750 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 PRAMEF17Q5VTA0 474 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 IL31Q6EBC2 164 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 KIRREL2Q6UWL6 708 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 SERPINA13PQ6UXR4 307 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 SEMA6DQ8NFY4 1073 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 PARD3BQ8TEW8 1205 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 SNX18Q96RF0 628 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 SLC25A32Q9H2D1 315 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 MGAT4CQ9UBM8 478 aa7.53□□□□□ -1.2
SS18-214ENST00000580003 TMPRSS11DO60235 418 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 PLIN1O60240 522 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 IDEP14735 1019 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 TNFSF4P23510 183 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 RBL1P28749 1068 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 ATICP31939 592 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 PSG6Q00889 435 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 GRM1Q13255 1194 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 ST3GAL2Q16842 350 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 PROSER3Q2NL68 480 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 ARL13BQ3SXY8 428 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 RNASE12Q5GAN4 147 aaKnown RBP7.52□□□□□ -1.21
SS18-214ENST00000580003 FAM209BQ5JX69 171 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 TXLNBQ8N3L3 684 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 FSTL5Q8N475 847 aaPredicted RBP7.52□□□□□ -1.21
SS18-214ENST00000580003 CTHRC1Q96CG8 243 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 VPS50Q96JG6 964 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 TNIP3Q96KP6 325 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 EIF2AQ9BY44 585 aaKnown RBP7.52□□□□□ -1.21
SS18-214ENST00000580003 ZBTB26Q9HCK0 441 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 LPAR3Q9UBY5 353 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 VPS51Q9UID3 782 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 SLC27A6Q9Y2P4 619 aa7.52□□□□□ -1.21
SS18-214ENST00000580003 RASA4BC9J798 803 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 RASA4O43374 803 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 SPRY2O43597 315 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 COQ9O75208 318 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 TM4SF4P48230 202 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 RENBPP51606 427 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 COPAP53621 1224 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 TUBA4AP68366 448 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 TFF2Q03403 129 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 CLCA4Q14CN2 919 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 FAXCQ5TGI0 409 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 USP17L6PQ6QN14 398 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 CRTC1Q6UUV9 634 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 USP49Q70CQ1 688 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 PNLDC1Q8NA58 520 aaKnown RBP7.51□□□□□ -1.21
SS18-214ENST00000580003 CCDC138Q96M89 665 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 RIPOR3Q96MK2 946 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 MMS19Q96T76 1030 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 SELENOOQ9BVL4 669 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 GJB4Q9NTQ9 266 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 TMOD4Q9NZQ9 345 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 PHTF1Q9UMS5 762 aa7.51□□□□□ -1.21
SS18-214ENST00000580003 A8MVJ9 347 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 UBE2Q2LH0YL09 131 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 CCNT2O60583 730 aaKnown RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 ZNF37AP17032 561 aaPredicted RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 YY1P25490 414 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 ALDH5A1P51649 535 aaPredicted RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 NEK3P51956 506 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 EIF4A1P60842 406 aaKnown RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 LMAN2Q12907 356 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 CERKLQ49MI3 558 aaPredicted RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 HIBCHQ6NVY1 386 aaPredicted RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 METTL25Q8N6Q8 603 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 MBD3L2Q8NHZ7 208 aaPredicted RBP7.5□□□□□ -1.21
SS18-214ENST00000580003 BRI3BPQ8WY22 251 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 WDYHV1Q96HA8 205 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 MYD88Q99836 296 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 AS3MTQ9HBK9 375 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 CEP83Q9Y592 693 aa7.5□□□□□ -1.21
SS18-214ENST00000580003 ARHGEF17Q96PE2 2063 aaPredicted RBP7.49□□□□□ -1.21
SS18-214ENST00000580003 POC1B-GALNT4F8VUJ3 575 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 GCATO75600 419 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 HARSP12081 509 aaKnown RBP7.49□□□□□ -1.21
SS18-214ENST00000580003 DIO1P49895 249 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 COPB1P53618 953 aaKnown RBP7.49□□□□□ -1.21
SS18-214ENST00000580003 SRSF4Q08170 494 aaKnown RBP7.49□□□□□ -1.21
SS18-214ENST00000580003 GPS1Q13098 491 aa7.49□□□□□ -1.21
SS18-214ENST00000580003 PMS2P11Q13670 270 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms