RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 USP46P62068 366 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 ZNF569Q5MCW4 686 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 SYCE1Q8N0S2 351 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 SLC35F6Q8N357 371 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 NDRG1Q92597 394 aaKnown RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 TRMT2BQ96GJ1 504 aaKnown RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 C16orf45Q96MC5 204 aaPredicted RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 DDX23Q9BUQ8 820 aaKnown RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 TRIM62Q9BVG3 475 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 COLQQ9Y215 455 aaPredicted RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 ASB3Q9Y575 518 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 ZNF638Q14966 1978 aaKnown RBP16.91■□□□□ 0.3
SS18-211ENST00000578954 MYO16Q9Y6X6 1858 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 LAMA3Q16787 3333 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 LTFP02788 710 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 FYNP06241 537 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 C8AP07357 584 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 POU2F2P09086 479 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 ZDHHC11BP0C7U3 371 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 GPD1P21695 349 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 YWHAQP27348 245 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 HOXA9P31269 272 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 MATKP42679 507 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 SLC1A1P43005 524 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 PTPN9P43378 593 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 GNG11P61952 73 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 YWHAZP63104 245 aaKnown RBP16.91■□□□□ 0.3
SS18-211ENST00000578954 TWF1Q12792 350 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 PIGHQ14442 188 aaPredicted RBP16.91■□□□□ 0.3
SS18-211ENST00000578954 VEPH1Q14D04 833 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 ACAP1Q15027 740 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 PTPROQ16827 1216 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 DUSP6Q16828 381 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 HFE2Q6ZVN8 426 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 ADGRD2Q7Z7M1 963 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 SCD5Q86SK9 330 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 MON1AQ86VX9 555 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 ARHGAP18Q8N392 663 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 EMC1Q8N766 993 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 STKLD1Q8NE28 680 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 SLC7A14Q8TBB6 771 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 GIPC2Q8TF65 315 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 RXFP2Q8WXD0 754 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 OVCA2Q8WZ82 227 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 NT5C3BQ969T7 300 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 PSMG2Q969U7 264 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 BTBD6Q96KE9 485 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 WDR24Q96S15 920 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 CDCA3Q99618 268 aaPredicted RBP16.91■□□□□ 0.3
SS18-211ENST00000578954 ZNF576Q9H609 170 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 POPDC2Q9HBU9 364 aa16.91■□□□□ 0.3
SS18-211ENST00000578954 FANCGO15287 622 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 GRAP2O75791 330 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 ZMYND10O75800 440 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 CSPG5O95196 566 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 NOS2P35228 1153 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 PSEN1P49768 467 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 EPHB3P54753 998 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 YWHAGP61981 247 aaKnown RBP eCLIP16.9■□□□□ 0.3
SS18-211ENST00000578954 MTMR3Q13615 1198 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 KCNC3Q14003 757 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 MESDQ14696 234 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 BNIPLQ7Z465 357 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 DAAM2Q86T65 1068 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 NT5DC3Q86UY8 548 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 DEFB106AQ8N104 65 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 GPR152Q8TDT2 470 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 FAM149B1Q96BN6 582 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 CNPY3Q9BT09 278 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 RRN3Q9NYV6 651 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.9■□□□□ 0.3
SS18-211ENST00000578954 LMCD1Q9NZU5 365 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 DPP7Q9UHL4 492 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 ALG6Q9Y672 507 aa16.9■□□□□ 0.3
SS18-211ENST00000578954 TRIOBPQ9H2D6 2365 aa16.89■□□□□ 0.3
SS18-211ENST00000578954 RFXAPO00287 272 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 SPATA31D3P0C874 917 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 PDGFRAP16234 1089 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 PSMA2P25787 234 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 SDC4P31431 198 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 TAF10Q12962 218 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 CCDC14Q49A88 953 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 PRPF38BQ5VTL8 546 aaKnown RBP16.89■□□□□ 0.29
SS18-211ENST00000578954 SNX30Q5VWJ9 437 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 BSPRYQ5W0U4 402 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 SPATA31D4Q6ZUB0 917 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 ITIH5Q86UX2 942 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 ZNF276Q8N554 614 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 PDZD8Q8NEN9 1154 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.89■□□□□ 0.29
SS18-211ENST00000578954 CENPIQ92674 756 aaPredicted RBP16.89■□□□□ 0.29
SS18-211ENST00000578954 CD101Q93033 1021 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 FBXO32Q969P5 355 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 NPY6RQ99463 290 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 GOLPH3Q9H4A6 298 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 NMUR1Q9HB89 426 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 MAN1C1Q9NR34 630 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 CLIC5Q9NZA1 410 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 GMIPQ9P107 970 aa16.89■□□□□ 0.29
SS18-211ENST00000578954 UXTQ9UBK9 157 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms