RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OVOL3O00110 214 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 EIF5BO60841 1220 aaKnown RBP6.29□□□□□ -1.4
NUP88-213ENST00000576862 RBMXL2O75526 392 aaKnown RBP6.29□□□□□ -1.4
NUP88-213ENST00000576862 C1RP00736 705 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 FGAP02671 866 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 HARSP12081 509 aaKnown RBP6.29□□□□□ -1.4
NUP88-213ENST00000576862 ATICP31939 592 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 HTR7P34969 479 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 MTHFSP49914 203 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 COPAP53621 1224 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 MZT2AQ6P582 158 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 CRTC1Q6UUV9 634 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 KIRREL2Q6UWL6 708 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 BEND5Q7L4P6 421 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 RAB11FIP4Q86YS3 637 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 CCDC146Q8IYE0 955 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 SIRT6Q8N6T7 355 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 BRI3BPQ8WY22 251 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 PCGF6Q9BYE7 350 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 TRIM36Q9NQ86 728 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 SH3BP4Q9P0V3 963 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 AMFRQ9UKV5 643 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 SLC27A6Q9Y2P4 619 aa6.29□□□□□ -1.4
NUP88-213ENST00000576862 ARP10275 920 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 MYCLP12524 364 aaPredicted RBP6.28□□□□□ -1.4
NUP88-213ENST00000576862 MYL4P12829 197 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 FBLP22087 321 aaKnown RBP6.28□□□□□ -1.4
NUP88-213ENST00000576862 GABRB3P28472 473 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 SUMO2P61956 95 aaKnown RBP6.28□□□□□ -1.4
NUP88-213ENST00000576862 SLC35G1Q2M3R5 365 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 PROSER3Q2NL68 480 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 ARL13BQ3SXY8 428 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 CLEC9AQ6UXN8 241 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 PTCHD4Q6ZW05 846 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 SVIPQ8NHG7 77 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 CYP2W1Q8TAV3 490 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 DPF1Q92782 380 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 CCDC138Q96M89 665 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 MAGEB5Q9BZ81 275 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 SLC25A32Q9H2D1 315 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 MAN2B2Q9Y2E5 1009 aa6.28□□□□□ -1.4
NUP88-213ENST00000576862 MANSC4A6NHS7 340 aaPredicted RBP6.27□□□□□ -1.41
NUP88-213ENST00000576862 CES2O00748 559 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 NDST3O95803 873 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 RBL1P28749 1068 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 MCM5P33992 734 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 DIO1P49895 249 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 HOXA4Q00056 320 aaPredicted RBP6.27□□□□□ -1.41
NUP88-213ENST00000576862 IZUMO3Q5VZ72 239 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 DPY19L2P1Q6NXN4 242 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 ZNF575Q86XF7 245 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 TERB1Q8NA31 727 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 MBD3L2Q8NHZ7 208 aaPredicted RBP6.27□□□□□ -1.41
NUP88-213ENST00000576862 SGCZQ96LD1 299 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 MYD88Q99836 296 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 CIPCQ9C0C6 399 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 CCDC180Q9P1Z9 1646 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 COL15A1P39059 1388 aa6.27□□□□□ -1.41
NUP88-213ENST00000576862 CREB1P16220 341 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 DEUP1Q05D60 604 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 LMAN2Q12907 356 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 RAP1GAP2Q684P5 730 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 SUMO4Q6EEV6 95 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 SYCE2Q6PIF2 218 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 TRIM72Q6ZMU5 477 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 NOL8Q76FK4 1167 aaKnown RBP6.26□□□□□ -1.41
NUP88-213ENST00000576862 BCDIN3DQ7Z5W3 292 aaKnown RBP6.26□□□□□ -1.41
NUP88-213ENST00000576862 SRLQ86TD4 932 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 SFTPA1Q8IWL2 248 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 TXLNBQ8N3L3 684 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 GLIS1Q8NBF1 620 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 HASPINQ8TF76 798 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 KIAA1191Q96A73 305 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 SNX18Q96RF0 628 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 MMS19Q96T76 1030 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 ZBTB26Q9HCK0 441 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 ASIC5Q9NY37 505 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 NKX1-2Q9UD57 310 aaPredicted RBP6.26□□□□□ -1.41
NUP88-213ENST00000576862 ASAP1Q9ULH1 1129 aa6.26□□□□□ -1.41
NUP88-213ENST00000576862 TCRBV5S1A1TA0A578 114 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 LINC01548A6NM66 108 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 A8MVJ9 347 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 TISP43B9A030 160 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 H7C1Q1 480 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 EXOC3O60645 756 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 SNX2O60749 519 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 CBFA2T3O75081 653 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 CD19P15391 556 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 MST1P26927 711 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 RENBPP51606 427 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 CLCA4Q14CN2 919 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 TMEM119Q4V9L6 283 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 SYCP2LQ5T4T6 812 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 ABLIM2Q6H8Q1 611 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 USP17L6PQ6QN14 398 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 ZNF782Q6ZMW2 699 aaPredicted RBP6.25□□□□□ -1.41
NUP88-213ENST00000576862 CCDC28AQ8IWP9 274 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 SEMA6DQ8NFY4 1073 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 SUN3Q8TAQ9 357 aa6.25□□□□□ -1.41
NUP88-213ENST00000576862 GJA10Q969M2 543 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms