RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ELF4Q99607 663 aaPredicted RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 ARHGAP9Q9BRR9 750 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 SLC26A6Q9BXS9 759 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 RPF1Q9H9Y2 349 aaKnown RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 PHLPP2Q6ZVD8 1323 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 DNHD1Q96M86 4753 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 SCAMP3O14828 347 aaKnown RBP17.39■□□□□ 0.37
VPS53-218ENST00000575207 OLFM2O95897 454 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 GUCY2FP51841 1108 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 E2F1Q01094 437 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 SHBQ15464 509 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 NFE2Q16621 373 aaPredicted RBP17.39■□□□□ 0.37
VPS53-218ENST00000575207 SEZ6Q53EL9 994 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 GALNT17Q6IS24 598 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 METTL23Q86XA0 190 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 LEO1Q8WVC0 666 aaPredicted RBP17.39■□□□□ 0.37
VPS53-218ENST00000575207 SNX19Q92543 992 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 OTUB2Q96DC9 234 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 RNF38Q9H0F5 515 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 TMEM134Q9H6X4 195 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 ABCB6Q9NP58 842 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 PCDHA12Q9UN75 941 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 CPQQ9Y646 472 aa17.39■□□□□ 0.37
VPS53-218ENST00000575207 SPENQ96T58 3664 aaKnown RBP17.39■□□□□ 0.37
VPS53-218ENST00000575207 F8P00451 2351 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 WASH3PC4AMC7 463 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 XPOTO43592 962 aaKnown RBP17.38■□□□□ 0.37
VPS53-218ENST00000575207 SPATA31C1P0DKV0 1188 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 CXCL8P10145 99 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 IFNAR1P17181 557 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 GRIK1P39086 918 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 GRIN1Q05586 938 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 ST3GAL1Q11201 340 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 IGFBP7Q16270 282 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 TTC22Q5TAA0 569 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 TAS1R3Q7RTX0 852 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS53-218ENST00000575207 NAP1L4Q99733 375 aaKnown RBP17.38■□□□□ 0.37
VPS53-218ENST00000575207 LSG1Q9H089 658 aaKnown RBP17.38■□□□□ 0.37
VPS53-218ENST00000575207 EPN3Q9H201 632 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 CFAP97Q9P2B7 532 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 NUMA1Q14980 2115 aa17.38■□□□□ 0.37
VPS53-218ENST00000575207 PRRT4C9JH25 899 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 EFSO43281 561 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 FAM87AP0C7U9 286 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 HARSP12081 509 aaKnown RBP17.37■□□□□ 0.37
VPS53-218ENST00000575207 ABCB4P21439 1286 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 ACP1P24666 158 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 CYP2F1P24903 491 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 ZNF132P52740 706 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 EXTL1Q92935 676 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 SIPA1Q96FS4 1042 aa17.37■□□□□ 0.37
VPS53-218ENST00000575207 ZBTB45Q96K62 511 aaPredicted RBP17.37■□□□□ 0.37
VPS53-218ENST00000575207 C6orf106Q9H6K1 298 aaPredicted RBP17.37■□□□□ 0.37
VPS53-218ENST00000575207 PIRO00625 290 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 VILLO15195 856 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 PPFIA2O75334 1257 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 STARD3Q14849 445 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 SGO2Q562F6 1265 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 PRAMEF14Q5SWL7 426 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 SPATA1Q5VX52 437 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 CDCP2Q5VXM1 449 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 GRAMD4Q6IC98 578 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 KANSL1Q7Z3B3 1105 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 TMPRSS6Q8IU80 811 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 TICAM1Q8IUC6 712 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 FAM177A1Q8N128 213 aaPredicted RBP17.36■□□□□ 0.37
VPS53-218ENST00000575207 KIFAP3Q92845 792 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 CCNL2Q96S94 520 aaPredicted RBP17.36■□□□□ 0.37
VPS53-218ENST00000575207 TSPAN18Q96SJ8 248 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 SLC25A18Q9H1K4 315 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 SMPD4Q9NXE4 827 aa17.36■□□□□ 0.37
VPS53-218ENST00000575207 YKT6O15498 198 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 USP12O75317 370 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 CD27P26842 260 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 NOLC1Q14978 699 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS53-218ENST00000575207 C9orf57Q5W0N0 161 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 WSCD1Q658N2 575 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 ADAT2Q7Z6V5 191 aaKnown RBP17.35■□□□□ 0.37
VPS53-218ENST00000575207 DDX42Q86XP3 938 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS53-218ENST00000575207 DUSP9Q99956 384 aaKnown RBP17.35■□□□□ 0.37
VPS53-218ENST00000575207 ZNF768Q9H5H4 540 aaKnown RBP17.35■□□□□ 0.37
VPS53-218ENST00000575207 POLD4Q9HCU8 107 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 ARHGAP28Q9P2N2 729 aa17.35■□□□□ 0.37
VPS53-218ENST00000575207 CYB561D2O14569 222 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 TOM1L1O75674 476 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 CLTAP09496 248 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 TNFRSF8P28908 595 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 TSPY1Q01534 308 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 CLN3Q13286 438 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 SFMBT2Q5VUG0 894 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 CATSPER3Q86XQ3 398 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 SCFD1Q8WVM8 642 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 PRCCQ92733 491 aaPredicted RBP17.34■□□□□ 0.37
VPS53-218ENST00000575207 BIRC7Q96CA5 298 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 ORAI3Q9BRQ5 295 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 ACE2Q9BYF1 805 aaPredicted RBP17.34■□□□□ 0.37
VPS53-218ENST00000575207 CCSER1Q9C0I3 900 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 SPHK2Q9NRA0 654 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms