RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ZDHHC12Q96GR4 267 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FEM1CQ96JP0 617 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CNDP2Q96KP4 475 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 SPATA17Q96L03 361 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 NOX5Q96PH1 765 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FMNL2Q96PY5 1086 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 HIST1H2AAQ96QV6 131 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 GPR20Q99678 358 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 SMOQ99835 787 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 MECRQ9BV79 373 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 MXD3Q9BW11 206 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ITPAQ9BY32 194 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TXLNGYQ9BZA5 131 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FTOQ9C0B1 505 aaKnown RBP eCLIP2.31□□□□□ -2.04
CHD3-217ENST00000574022 USP44Q9H0E7 712 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ENKD1Q9H0I2 346 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 SIL1Q9H173 461 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TAOK3Q9H2K8 898 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CCDC134Q9H6E4 229 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 RETREG1Q9H6L5 497 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZNF552Q9H707 407 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 L2HGDHQ9H9P8 463 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 PLEKHA2Q9HB19 425 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 IL21RQ9HBE5 538 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FSCN3Q9NQT6 498 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TMLHEQ9NVH6 421 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TAS2R10Q9NYW0 307 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 PLA2G3Q9NZ20 509 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 HDAC5Q9UQL6 1122 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 USP15Q9Y4E8 981 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 LYVE1Q9Y5Y7 322 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 RAD54BQ9Y620 910 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 PASKQ96RG2 1323 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 UBE2QL1A1L167 161 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 VILLO15195 856 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CD3EAPO15446 510 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 DHHO43323 396 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TULP3O75386 442 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 BEST1O76090 585 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 HSPA4LO95757 839 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ITGB1P05556 798 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ADRB2P07550 413 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CYP21A2P08686 494 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CLTBP09497 229 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 WEE2P0C1S8 567 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CSH1P0DML2 217 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CSH2P0DML3 217 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 HGFP14210 728 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CHRM3P20309 590 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SLC6A2P23975 617 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PRKCHP24723 683 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NFKBIAP25963 317 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 EPHA8P29322 1005 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 NTSR1P30989 418 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ACSL1P33121 698 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NNMTP40261 264 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 GCLCP48506 637 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 HARS2P49590 506 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 GATMP50440 423 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TOB1P50616 345 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PGDP52209 483 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 RARSP54136 660 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 SNX16P57768 344 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NLRP5P59047 1200 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 RPS3AP61247 264 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PLIN5Q00G26 463 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PIGFQ07326 219 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZNF844Q08AG5 666 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 KCNMA1Q12791 1236 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 LRMPQ12912 555 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 MYO1EQ12965 1108 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PRPF4BQ13523 1007 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 TDGQ13569 410 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 DCTN1Q14203 1278 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 USP10Q14694 798 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PRICKLE4Q2TBC4 344 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZNF792Q3KQV3 632 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZIK1Q3SY52 487 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 CCDC92Q53HC0 331 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZMAT1Q5H9K5 638 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NOMO2Q5JPE7 1267 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NKAPLQ5M9Q1 402 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 MCTP2Q6DN12 878 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NAA16Q6N069 864 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 EFCAB12Q6NXP0 572 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TAF2Q6P1X5 1199 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 DENND1BQ6P3S1 775 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 INO80CQ6PI98 192 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 CLEC9AQ6UXN8 241 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SYNE3Q6ZMZ3 975 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 IKBIPQ70UQ0 350 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 KDELC2Q7Z4H8 507 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZNF605Q86T29 641 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TRABD2AQ86V40 505 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SNX32Q86XE0 403 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 DTX1Q86Y01 620 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 XYLT1Q86Y38 959 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 GALNT13Q8IUC8 556 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 REXO1L1PQ8IX06 675 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms