RNA–Protein interactions for RNA: ENST00000568569.1

GTF3C1-209, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-209ENST00000568569 STARD13Q9Y3M8 1113 aa12.55□□□□□ -0.4
GTF3C1-209ENST00000568569 PTPRJQ12913 1337 aa12.55□□□□□ -0.4
GTF3C1-209ENST00000568569 HELZP42694 1942 aaKnown RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 PLXND1Q9Y4D7 1925 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 PCDH15Q96QU1 1955 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 IGSF10Q6WRI0 2623 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 NDUFS2O75306 463 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 TACC1O75410 805 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 RTN3O95197 1032 aaPredicted RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 NDUFV2P19404 249 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 YWHAQP27348 245 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 GJB2P29033 226 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 GNL1P36915 607 aaPredicted RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 WASP42768 502 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 TUBP50607 506 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 CACNA2D1P54289 1103 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 HECTD3Q5T447 861 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 SV2BQ7L1I2 683 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 MIB1Q86YT6 1006 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 WDR49Q8IV35 697 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 BBS7Q8IWZ6 715 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 CHPFQ8IZ52 775 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 NUP93Q8N1F7 819 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 PNPLA1Q8N8W4 532 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 OR6B3Q8NGW1 331 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 IPO4Q8TEX9 1081 aaKnown RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 FOXJ1Q92949 421 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 FBXO32Q969P5 355 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 DNAJC19Q96DA6 116 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 ZNF419Q96HQ0 510 aaPredicted RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 EPSTI1Q96J88 318 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 MRPL45Q9BRJ2 306 aaKnown RBP12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 ZDHHC5Q9C0B5 715 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 ZNF518BQ9C0D4 1074 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 CD248Q9HCU0 757 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 CCDC39Q9UFE4 941 aa12.54□□□□□ -0.4
GTF3C1-209ENST00000568569 ZNF233A6NK53 670 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 PRPF6O94906 941 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 IDEP14735 1019 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 PTPN1P18031 435 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 GRIK2Q13002 908 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 SF3A1Q15459 793 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 WDR45BQ5MNZ6 344 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 EGFLAMQ63HQ2 1017 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 GRAMD4Q6IC98 578 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 USP49Q70CQ1 688 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 BRAPQ7Z569 592 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 GLRX5Q86SX6 157 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 TMEM25Q86YD3 366 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 GABRG3Q99928 467 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 TMEM30AQ9NV96 361 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 DNAJC17Q9NVM6 304 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 HCN2Q9UL51 889 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 NME7Q9Y5B8 376 aa12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 FLNBO75369 2602 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-209ENST00000568569 MYO18AQ92614 2054 aaKnown RBP12.52□□□□□ -0.4
GTF3C1-209ENST00000568569 GCN1Q92616 2671 aaKnown RBP12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 FRMD3A2A2Y4 597 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 CLDN5O00501 218 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 TRIM24O15164 1050 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 FAM163BP0C2L3 166 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 TXLNAP40222 546 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 TNNC1P63316 161 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 SNX30Q5VWJ9 437 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 RRAGBQ5VZM2 374 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 TOGARAM2Q6ZUX3 1019 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 TRAPPC11Q7Z392 1133 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 CBWD2Q8IUF1 395 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 SPRYD3Q8NCJ5 442 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 B3GALNT2Q8NCR0 500 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 MDM1Q8TC05 714 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 SCFD1Q8WVM8 642 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 MRGPRX1Q96LB2 322 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 XPO6Q96QU8 1125 aaKnown RBP12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 ACOX2Q99424 681 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 FGFBP2Q9BYJ0 223 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 NACA2Q9H009 215 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 DPEP3Q9H4B8 488 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 CCSER2Q9H7U1 834 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 SCUBE2Q9NQ36 999 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 RAXQ9Y2V3 346 aa12.52□□□□□ -0.41
GTF3C1-209ENST00000568569 ADAMTS20P59510 1910 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 A8MXQ7 604 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 CACNG3O60359 315 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 CBFA2T3O75081 653 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 IRF1P10914 325 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 SLC5A3P53794 718 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 WDR72Q3MJ13 1102 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 KIAA1324Q6UXG2 1013 aaKnown RBP12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 STXBP4Q6ZWJ1 553 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 SCAMP5Q8TAC9 235 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 HNRNPLLQ8WVV9 542 aaKnown RBP12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 ERLEC1Q96DZ1 483 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 TMX3Q96JJ7 454 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 B3GNT5Q9BYG0 378 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 KIAA1586Q9HCI6 787 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 DMAP1Q9NPF5 467 aaPredicted RBP12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 CD93Q9NPY3 652 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 PANK4Q9NVE7 773 aa12.51□□□□□ -0.41
GTF3C1-209ENST00000568569 CHORDC1Q9UHD1 332 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms