RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TULP2O00295 520 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 SCAMP3O14828 347 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 TBX18O95935 607 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 CALCAP01258 141 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 VDRP11473 427 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 CD19P15391 556 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 IFNAR2P48551 515 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 TUBP50607 506 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 GCNT1Q02742 428 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 MTAPQ13126 283 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 TPD52L1Q16890 204 aaPredicted RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 RSPO4Q2I0M5 234 aaPredicted RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 GOLGA7BQ2TAP0 167 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 SGO2Q562F6 1265 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 C1orf228Q6PIY5 440 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 RBM43Q6ZSC3 357 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 SCD5Q86SK9 330 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 CRACR2AQ9BSW2 395 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 SEMA4AQ9H3S1 761 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 THAP9Q9H5L6 903 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 FBRSL1Q9HCM7 1045 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 TLR8Q9NR97 1041 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 RBM12Q9NTZ6 932 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 CFAP97Q9P2B7 532 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 TSPAN16Q9UKR8 245 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 KIAA1257Q9ULG3 409 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 DENND4CQ5VZ89 1909 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 A0A1W2PQH9 124 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 GOLGA6L22H0YM25 854 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 O00370 1275 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 PAEPP09466 180 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 SLC9A1P19634 815 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 GJA4P35212 333 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 MAGEA9P43362 315 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 APBA1Q02410 837 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 PDE4CQ08493 712 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 GAS6Q14393 721 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 HSP90AA4PQ58FG1 418 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 RAB41Q5JT25 222 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 NAIF1Q69YI7 327 aaPredicted RBP15.84■□□□□ 0.13
VPS39-210ENST00000568357 CCDC186Q7Z3E2 898 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 ADGRG2Q8IZP9 1017 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 UBA3Q8TBC4 463 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 WBP2Q969T9 261 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 UBE2TQ9NPD8 197 aaPredicted RBP15.84■□□□□ 0.13
VPS39-210ENST00000568357 CYLDQ9NQC7 956 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 DACH1Q9UI36 760 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 TICRRQ7Z2Z1 1910 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 ACACBO00763 2458 aa15.84■□□□□ 0.13
VPS39-210ENST00000568357 F5P12259 2224 aa15.83■□□□□ 0.13
VPS39-210ENST00000568357 TLR5O60602 858 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 SP9P0CG40 484 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 MTIF2P46199 727 aaKnown RBP15.83■□□□□ 0.12
VPS39-210ENST00000568357 GALK1P51570 392 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 ZNF132P52740 706 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 PKDCCQ504Y2 493 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 GJB7Q6PEY0 223 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 TRIM65Q6PJ69 517 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 CPA6Q8N4T0 437 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 RBBP8NLQ8NC74 664 aaPredicted RBP15.83■□□□□ 0.12
VPS39-210ENST00000568357 ATP2A3Q93084 1043 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 CHRDQ9H2X0 955 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.83■□□□□ 0.12
VPS39-210ENST00000568357 NUDT5Q9UKK9 219 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 CNTN6Q9UQ52 1028 aa15.83■□□□□ 0.12
VPS39-210ENST00000568357 ANAPC1Q9H1A4 1944 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 MAP1BP46821 2468 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 TRDMT1O14717 391 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 RARGP13631 454 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 BRD2P25440 801 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 ATP5C1P36542 298 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 TKTL1P51854 596 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 BCAT1P54687 386 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 SLC8A3P57103 927 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 CCINQ13939 588 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 CNGA2Q16280 664 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 ST3GAL2Q16842 350 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 TMEM196Q5HYL7 178 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 CT47A1Q5JQC4 288 aaPredicted RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 FSTL4Q6MZW2 842 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 LCLAT1Q6UWP7 414 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 MAMSTRQ6ZN01 415 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 KIAA1958Q8N8K9 716 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 NDRG1Q92597 394 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 RUBCNQ92622 972 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 KLF16Q9BXK1 252 aaPredicted RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 NACA2Q9H009 215 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 SAMSN1Q9NSI8 373 aaKnown RBP15.82■□□□□ 0.12
VPS39-210ENST00000568357 HESX1Q9UBX0 185 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 NAGPAQ9UK23 515 aa15.82■□□□□ 0.12
VPS39-210ENST00000568357 E2F8A0AVK6 867 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 XPO1O14980 1071 aaKnown RBP15.81■□□□□ 0.12
VPS39-210ENST00000568357 MDM4O15151 490 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 LAMTOR5O43504 91 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 GREM1O60565 184 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 GABBR2O75899 941 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 PON1P27169 355 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 AMPD2Q01433 879 aa15.81■□□□□ 0.12
VPS39-210ENST00000568357 CSTF1Q05048 431 aaKnown RBP15.81■□□□□ 0.12
VPS39-210ENST00000568357 BST2Q10589 180 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms