RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GPR152Q8TDT2 470 aa32■■■□□ 2.71
CTCF-203ENST00000566078 SLC2A13Q96QE2 648 aa32■■■□□ 2.71
CTCF-203ENST00000566078 ENTPD7Q9NQZ7 604 aa32■■■□□ 2.71
CTCF-203ENST00000566078 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP32■■■□□ 2.71
CTCF-203ENST00000566078 C5orf67F2Z3F1 127 aa32■■■□□ 2.71
CTCF-203ENST00000566078 CES2O00748 559 aa32■■■□□ 2.71
CTCF-203ENST00000566078 TEX28O15482 410 aa32■■■□□ 2.71
CTCF-203ENST00000566078 MATKP42679 507 aa32■■■□□ 2.71
CTCF-203ENST00000566078 PTPN9P43378 593 aa32■■■□□ 2.71
CTCF-203ENST00000566078 ATP11AP98196 1134 aa32■■■□□ 2.71
CTCF-203ENST00000566078 ARFGAP1Q8N6T3 406 aa32■■■□□ 2.71
CTCF-203ENST00000566078 GOLGA1Q92805 767 aa32■■■□□ 2.71
CTCF-203ENST00000566078 SPATA17Q96L03 361 aa32■■■□□ 2.71
CTCF-203ENST00000566078 TCF25Q9BQ70 676 aa32■■■□□ 2.71
CTCF-203ENST00000566078 DDX23Q9BUQ8 820 aaKnown RBP32■■■□□ 2.71
CTCF-203ENST00000566078 SBDSQ9Y3A5 250 aaKnown RBP eCLIP32■■■□□ 2.71
CTCF-203ENST00000566078 CSPG5O95196 566 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 SEC24AO95486 1093 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 CXCL14O95715 111 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 ATF2P15336 505 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 SH3PXD2AQ5TCZ1 1133 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 CREG2Q8IUH2 290 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 FAM172AQ8WUF8 416 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 POF1BQ8WVV4 589 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 CARD9Q9H257 536 aa31.99■■■□□ 2.71
CTCF-203ENST00000566078 ATF6P18850 670 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 TUFMP49411 452 aaKnown RBP31.98■■■□□ 2.71
CTCF-203ENST00000566078 RWDD2BP57060 319 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 DCAF6Q58WW2 860 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 DENND5BQ6ZUT9 1274 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 SPPL3Q8TCT6 385 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 CARD6Q9BX69 1037 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 FBXO44Q9H4M3 255 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 CYP4F11Q9HBI6 524 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 NGRNQ9NPE2 291 aaKnown RBP31.98■■■□□ 2.71
CTCF-203ENST00000566078 EHD2Q9NZN4 543 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 HSFX1Q9UBD0 423 aa31.98■■■□□ 2.71
CTCF-203ENST00000566078 YBX2Q9Y2T7 364 aaKnown RBP31.98■■■□□ 2.71
CTCF-203ENST00000566078 H0YGN5 161 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 CEP104O60308 925 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 CNPP09543 421 aaKnown RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 DNAJB1P25685 340 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 NOS2P35228 1153 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 ERVFC1P60507 584 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 ZNF211Q13398 564 aaPredicted RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 CCDC181Q5TID7 509 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 MS4A14Q96JA4 679 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 C11orf84Q9BUA3 381 aaPredicted RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 CHD9Q3L8U1 2897 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 CAPN9O14815 690 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 RTN3O95197 1032 aaPredicted RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 FYNP06241 537 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 RB1P06400 928 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 TFE3P19532 575 aaPredicted RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 SULT1E1P49888 294 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 USP46P62068 366 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 SLC25A11Q02978 314 aaKnown RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 UBE3AQ05086 875 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 RAB6CQ53S08 254 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 PLPP4Q5VZY2 271 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 GIPC2Q8TF65 315 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 TGS1Q96RS0 853 aaKnown RBP31.97■■■□□ 2.71
CTCF-203ENST00000566078 RAB6CQ9H0N0 254 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 TLR9Q9NR96 1032 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 SMARCAL1Q9NZC9 954 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 STAP1Q9ULZ2 295 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 NAALADL1Q9UQQ1 740 aa31.97■■■□□ 2.71
CTCF-203ENST00000566078 MIPP30301 263 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 PCK1P35558 622 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 PBX2P40425 430 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 CKAP4Q07065 602 aaKnown RBP31.96■■■□□ 2.71
CTCF-203ENST00000566078 SMC1AQ14683 1233 aaKnown RBP31.96■■■□□ 2.71
CTCF-203ENST00000566078 HADHQ16836 314 aaKnown RBP31.96■■■□□ 2.71
CTCF-203ENST00000566078 SAMD11Q96NU1 681 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 TBCBQ99426 244 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 SCML2Q9UQR0 700 aa31.96■■■□□ 2.71
CTCF-203ENST00000566078 NCAM1P13591 858 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 YWHAGP61981 247 aaKnown RBP eCLIP31.95■■■□□ 2.71
CTCF-203ENST00000566078 SLC25A52Q3SY17 297 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 LRRC38Q5VT99 294 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 SYPL2Q5VXT5 272 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 BSPRYQ5W0U4 402 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 EDEM1Q92611 657 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 ADAM33Q9BZ11 813 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 IL37Q9NZH6 218 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 PCSK1NQ9UHG2 260 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 YIPF1Q9Y548 306 aa31.95■■■□□ 2.71
CTCF-203ENST00000566078 TNRC18O15417 2968 aaPredicted RBP31.95■■■□□ 2.7
CTCF-203ENST00000566078 CHD7Q9P2D1 2997 aa31.95■■■□□ 2.7
CTCF-203ENST00000566078 SLC38A8A6NNN8 435 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 SLU7O95391 586 aaKnown RBP31.94■■■□□ 2.7
CTCF-203ENST00000566078 MTMR3Q13615 1198 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 SEL1L2Q5TEA6 688 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 TXNRD3NBQ6F5E7 133 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 KATNAL2Q8IYT4 538 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 CEP112Q8N8E3 955 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 MNS1Q8NEH6 495 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 CENPIQ92674 756 aaPredicted RBP31.94■■■□□ 2.7
CTCF-203ENST00000566078 TRIM62Q9BVG3 475 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 ZWILCHQ9H900 591 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms