RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 NMUR1Q9HB89 426 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 PNPLA8Q9NP80 782 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 TLR8Q9NR97 1041 aaKnown RBP19.4■□□□□ 0.7
CLN3-221ENST00000566057 MYO18AQ92614 2054 aaKnown RBP19.4■□□□□ 0.7
CLN3-221ENST00000566057 TLR5O60602 858 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 LILRB5O75023 590 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 NFATC1O95644 943 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 CYP17A1P05093 508 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 DMWDQ09019 674 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 NR1H3Q13133 447 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 ARHGAP17Q68EM7 881 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 TRIM59Q8IWR1 403 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 KIAA1958Q8N8K9 716 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 SUMF1Q8NBK3 374 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 EML5Q05BV3 1969 aa19.39■□□□□ 0.69
CLN3-221ENST00000566057 A0A1W2PQH9 124 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 E2F8A0AVK6 867 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 K7ESF4 209 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 DRD1P21728 446 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 OPRD1P41143 372 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 MARSP56192 900 aaKnown RBP19.38■□□□□ 0.69
CLN3-221ENST00000566057 KCNH2Q12809 1159 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 DHCR24Q15392 516 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 RHBDF2Q6PJF5 856 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 SCD5Q86SK9 330 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 TTC30AQ86WT1 665 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 DDX42Q86XP3 938 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-221ENST00000566057 ANKRD52Q8NB46 1076 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 KAT5Q92993 513 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 CD101Q93033 1021 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 FAM126AQ9BYI3 521 aaPredicted RBP19.38■□□□□ 0.69
CLN3-221ENST00000566057 CYLDQ9NQC7 956 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 USP3Q9Y6I4 520 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 DMXL1Q9Y485 3027 aa19.38■□□□□ 0.69
CLN3-221ENST00000566057 SLC9A3R1O14745 358 aaPredicted RBP19.37■□□□□ 0.69
CLN3-221ENST00000566057 RNF40O75150 1001 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 PAPSS2O95340 614 aaPredicted RBP19.37■□□□□ 0.69
CLN3-221ENST00000566057 GNA14O95837 355 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 IRF1P10914 325 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 TBXAS1P24557 533 aaPredicted RBP19.37■□□□□ 0.69
CLN3-221ENST00000566057 PPP2R5DQ14738 602 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 CCDC186Q7Z3E2 898 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 NT5C1BQ96P26 610 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 KLF16Q9BXK1 252 aaPredicted RBP19.37■□□□□ 0.69
CLN3-221ENST00000566057 UBXN6Q9BZV1 441 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 NACA2Q9H009 215 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 CLSTN2Q9H4D0 955 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-221ENST00000566057 POLR3BQ9NW08 1133 aaPredicted RBP19.37■□□□□ 0.69
CLN3-221ENST00000566057 RWDD2AQ9UIY3 292 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 NUDT5Q9UKK9 219 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 SDK1Q7Z5N4 2213 aa19.37■□□□□ 0.69
CLN3-221ENST00000566057 SPAG17Q6Q759 2223 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 CHURC1-FNTBB4DL54 471 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 RNF225M0QZC1 329 aaPredicted RBP19.36■□□□□ 0.69
CLN3-221ENST00000566057 TULP2O00295 520 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 P4HA2O15460 535 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 RARGP13631 454 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 ATP5C1P36542 298 aaKnown RBP19.36■□□□□ 0.69
CLN3-221ENST00000566057 FNTBP49356 437 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 NRLP54845 237 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 YWHAEP62258 255 aaKnown RBP19.36■□□□□ 0.69
CLN3-221ENST00000566057 GOLGA7BQ2TAP0 167 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 SGO2Q562F6 1265 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 PIGZQ86VD9 579 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 ARHGEF19Q8IW93 802 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 BBS7Q8IWZ6 715 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 PPM1KQ8N3J5 372 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 EHBP1Q8NDI1 1231 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 TBC1D14Q9P2M4 693 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 TSPAN16Q9UKR8 245 aa19.36■□□□□ 0.69
CLN3-221ENST00000566057 ANTXRLA6NF34 631 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 MDM4O15151 490 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 GREM1O60565 184 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 AFPP02771 609 aaKnown RBP19.35■□□□□ 0.69
CLN3-221ENST00000566057 CD19P15391 556 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 SLC6A11P48066 632 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 PDE4CQ08493 712 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 MESP2Q0VG99 397 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 RAB41Q5JT25 222 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 HEATR6Q6AI08 1181 aaKnown RBP19.35■□□□□ 0.69
CLN3-221ENST00000566057 TMEM270Q6UE05 265 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 CLEC17AQ6ZS10 378 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 RRAGAQ7L523 313 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 UBA3Q8TBC4 463 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 TFAP2BQ92481 460 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 NAGPAQ9UK23 515 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 SH3BP1Q9Y3L3 701 aa19.35■□□□□ 0.69
CLN3-221ENST00000566057 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN3-221ENST00000566057 RALGAPA1Q6GYQ0 2036 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 K7EQS6 105 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 FGFR1OPO95684 399 aaKnown RBP19.34■□□□□ 0.69
CLN3-221ENST00000566057 CALCAP01258 141 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 CCDC192P0DO97 292 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 VDRP11473 427 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 CETN1Q12798 172 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 LY6G5CQ5SRR4 150 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 HTR3DQ70Z44 454 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 C12orf40Q86WS4 652 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 IRF2BP1Q8IU81 584 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms