RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 CD1EP15812 388 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 ATXN3P54252 364 aaPredicted RBP16.93■□□□□ 0.3
LINC00554-201ENST00000564841 NFX1Q12986 1120 aaKnown RBP16.93■□□□□ 0.3
LINC00554-201ENST00000564841 PTK7Q13308 1070 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 CHI3L2Q15782 390 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 UGCGQ16739 394 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 PPP6R3Q5H9R7 873 aaPredicted RBP16.93■□□□□ 0.3
LINC00554-201ENST00000564841 FAM102BQ5T8I3 360 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 PALM2Q8IXS6 379 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 ARL10Q8N8L6 244 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 SYTL5Q8TDW5 730 aaPredicted RBP16.93■□□□□ 0.3
LINC00554-201ENST00000564841 TMIGD2Q96BF3 282 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 TEKT3Q9BXF9 490 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 RBM38Q9H0Z9 239 aaKnown RBP16.93■□□□□ 0.3
LINC00554-201ENST00000564841 RNF146Q9NTX7 359 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 STRIP2Q9ULQ0 834 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 SH3GLB1Q9Y371 365 aa16.93■□□□□ 0.3
LINC00554-201ENST00000564841 DKC1O60832 514 aaKnown RBP eCLIP16.92■□□□□ 0.3
LINC00554-201ENST00000564841 DHRS4L1P0CG22 281 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 PTPRAP18433 802 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 DCTN2Q13561 401 aaKnown RBP16.92■□□□□ 0.3
LINC00554-201ENST00000564841 PDK1Q15118 436 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ARHGEF16Q5VV41 709 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ZNF280CQ8ND82 737 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 HELQQ8TDG4 1101 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 SLC35B4Q969S0 331 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 NACC1Q96RE7 527 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 MXRA8Q9BRK3 442 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ZNF180Q9UJW8 692 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 TGDSO95455 350 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 BACE1P56817 501 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 MRPS9P82933 396 aaKnown RBP16.92■□□□□ 0.3
LINC00554-201ENST00000564841 PPIDQ08752 370 aaKnown RBP16.92■□□□□ 0.3
LINC00554-201ENST00000564841 MTMR1Q13613 665 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ANKDD1AQ495B1 522 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 SLC44A4Q53GD3 710 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 DCAF15Q66K64 600 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 MOB2Q70IA6 237 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 RNF168Q8IYW5 571 aaPredicted RBP16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ALLCQ8N6M5 410 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 ICA1LQ8NDH6 482 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 SLC38A10Q9HBR0 1119 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 GPAMQ9HCL2 828 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 HSPBP1Q9NZL4 362 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 CIDEBQ9UHD4 219 aa16.92■□□□□ 0.3
LINC00554-201ENST00000564841 RBM47A0AV96 593 aaKnown RBP16.91■□□□□ 0.3
LINC00554-201ENST00000564841 FKBP6O75344 327 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 KBTBD12Q3ZCT8 623 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 RSPH3Q86UC2 560 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 GRIN3AQ8TCU5 1115 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 APOL6Q9BWW8 343 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 CNTN3Q9P232 1028 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 AVILO75366 819 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 PROSCO94903 275 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 DSG3P32926 999 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 RPL7AP62424 266 aaKnown RBP16.91■□□□□ 0.3
LINC00554-201ENST00000564841 MYBPC1Q00872 1141 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 SULT2A1Q06520 285 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 AMIGO2Q86SJ2 522 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 RHOT1Q8IXI2 618 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 SRPK1Q96SB4 655 aaKnown RBP16.91■□□□□ 0.3
LINC00554-201ENST00000564841 SLX1AQ9BQ83 275 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 GPRC5DQ9NZD1 345 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 ADM5C9JUS6 153 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 VWA5AO00534 786 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 DNAJA2O60884 412 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 LYPLA1O75608 230 aaPredicted RBP16.91■□□□□ 0.3
LINC00554-201ENST00000564841 PDGFRBP09619 1106 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 COL6A2P12110 1019 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 RFX1P22670 979 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 FDFT1P37268 417 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 MFAP3P55082 362 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 BMPR2Q13873 1038 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 CPNE9Q8IYJ1 553 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 LPAR1Q92633 364 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 ACSS3Q9H6R3 686 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 SOX13Q9UN79 622 aa16.91■□□□□ 0.3
LINC00554-201ENST00000564841 COL2A1P02458 1487 aaPredicted RBP16.91■□□□□ 0.3
LINC00554-201ENST00000564841 PEX1O43933 1283 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 TMEM63AO94886 807 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 MORF4L2Q15014 288 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 DNAL1Q4LDG9 190 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 C6orf52Q5T4I8 152 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 SGIP1Q9BQI5 828 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 RNF181Q9P0P0 153 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 PAIP2BQ9ULR5 123 aaKnown RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 POLR2AP24928 1970 aaKnown RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 TRIM43BA6NCK2 446 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 ATP2A1O14983 1001 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 TRMUO75648 421 aaKnown RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 UNGP13051 313 aaPredicted RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 SNAPC2Q13487 334 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 ITGA9Q13797 1035 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 TKFCQ3LXA3 575 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 NCCRP1Q6ZVX7 275 aaPredicted RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 GALNT4Q8N4A0 578 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 CPT1BQ92523 772 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 BARX2Q9UMQ3 279 aaPredicted RBP16.9■□□□□ 0.3
LINC00554-201ENST00000564841 DTNAQ9Y4J8 743 aa16.9■□□□□ 0.3
LINC00554-201ENST00000564841 AFG3L2Q9Y4W6 797 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms