RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ATP5C1P36542 298 aaKnown RBP14.11□□□□□ -0.15
CLK3-216ENST00000564468 TNK2Q07912 1038 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 GOLGA8FQ08AF8 430 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 GOLGA8DPQ0D2H9 430 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 CNGA2Q16280 664 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 GOLGA7BQ2TAP0 167 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 DGKKQ5KSL6 1271 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 TRIM65Q6PJ69 517 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 RRAGAQ7L523 313 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 CCDC186Q7Z3E2 898 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 ARHGEF19Q8IW93 802 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 FANCMQ8IYD8 2048 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 RBBP8NLQ8NC74 664 aaPredicted RBP14.11□□□□□ -0.15
CLK3-216ENST00000564468 ENOX1Q8TC92 643 aaKnown RBP14.11□□□□□ -0.15
CLK3-216ENST00000564468 TUBGCP2Q9BSJ2 902 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 EBF3Q9H4W6 596 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 LRRC4Q9HBW1 653 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 UBE2TQ9NPD8 197 aaPredicted RBP14.11□□□□□ -0.15
CLK3-216ENST00000564468 HPS4Q9NQG7 708 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 TBC1D14Q9P2M4 693 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 MTF2Q9Y483 593 aaPredicted RBP14.11□□□□□ -0.15
CLK3-216ENST00000564468 USP3Q9Y6I4 520 aa14.11□□□□□ -0.15
CLK3-216ENST00000564468 COL4A3Q01955 1670 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 E2F8A0AVK6 867 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 SHISA7A6NL88 538 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 KCNJ18B7U540 433 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 O00370 1275 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 LAMTOR5O43504 91 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 TPM2P07951 284 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 RALAP11233 206 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 EEF1GP26641 437 aaKnown RBP14.1□□□□□ -0.15
CLK3-216ENST00000564468 KCNJ12Q14500 433 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 ANGPT1Q15389 498 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 STX1AQ16623 288 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 VWA3BQ502W6 1294 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 RAB41Q5JT25 222 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 TRIM68Q6AZZ1 485 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 KLHDC10Q6PID8 442 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 LCLAT1Q6UWP7 414 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 GPRIN1Q7Z2K8 1008 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 PIGZQ86VD9 579 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 TTC30AQ86WT1 665 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 C1orf210Q8IVY1 113 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 SYNPOQ8N3V7 929 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 ZNF276Q8N554 614 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 TTC8Q8TAM2 541 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 OTUB2Q96DC9 234 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 CRACR2AQ9BSW2 395 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 NDST4Q9H3R1 872 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 CCSER2Q9H7U1 834 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 ECT2Q9H8V3 914 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 LMAN1LQ9HAT1 526 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 CYLDQ9NQC7 956 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 SPATA6Q9NWH7 488 aaPredicted RBP14.1□□□□□ -0.15
CLK3-216ENST00000564468 SMPD4Q9NXE4 827 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 CLIC5Q9NZA1 410 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 APEX2Q9UBZ4 518 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 CNTN6Q9UQ52 1028 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 SH3BP1Q9Y3L3 701 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 NFE2L3Q9Y4A8 694 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 WNT6Q9Y6F9 365 aa14.1□□□□□ -0.15
CLK3-216ENST00000564468 PES1O00541 588 aaKnown RBP14.09□□□□□ -0.15
CLK3-216ENST00000564468 CYP26A1O43174 497 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 MED7O43513 233 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 LMNAP02545 664 aaKnown RBP14.09□□□□□ -0.15
CLK3-216ENST00000564468 RARGP13631 454 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 KRT5P13647 590 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 ARSAP15289 507 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 PLA2G4AP47712 749 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 SOX9P48436 509 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 PDE4CQ08493 712 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 GRSF1Q12849 480 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLK3-216ENST00000564468 PPP2R5DQ14738 602 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 EML3Q32P44 896 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 RIN3Q8TB24 985 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 KAT5Q92993 513 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 KREMEN1Q96MU8 473 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 CHRDQ9H2X0 955 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 CFAP97Q9P2B7 532 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 DNMT3LQ9UJW3 386 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 NAGPAQ9UK23 515 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLK3-216ENST00000564468 FRYLO94915 3013 aa14.09□□□□□ -0.15
CLK3-216ENST00000564468 A0A1W2PQH9 124 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 RNF225M0QZC1 329 aaPredicted RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 TRDMT1O14717 391 aaKnown RBP14.08□□□□□ -0.16
CLK3-216ENST00000564468 ZBED1O96006 694 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 CHRNB1P11230 501 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 SLC9A1P19634 815 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 PTMSP20962 102 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 PON1P27169 355 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 GJA4P35212 333 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 TKTL1P51854 596 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 ZNF132P52740 706 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 ZXDBP98169 803 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 FZD5Q13467 585 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 PON2Q15165 354 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 MEA1Q16626 185 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 TCP11X2Q5H9J9 407 aa14.08□□□□□ -0.16
CLK3-216ENST00000564468 PM20D1Q6GTS8 502 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms