RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SMUG1Q53HV7 270 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 TTC39AQ5SRH9 613 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 LY6G5CQ5SRR4 150 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 INTS11Q5TA45 600 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 NUGGCQ68CJ6 796 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 FAM180BQ6P0A1 224 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 PPP1R21Q6ZMI0 780 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 LRRC55Q6ZSA7 311 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 B4GALNT4Q76KP1 1039 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 RAB11FIP4Q86YS3 637 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 AADATQ8N5Z0 425 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 CNTD1Q8N815 330 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 REPS2Q8NFH8 660 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 OR10H5Q8NGA6 315 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 FAM81AQ8TBF8 368 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 HOXB13Q92826 284 aaPredicted RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 VOPP1Q96AW1 172 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 UHRF1Q96T88 793 aaPredicted RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 C7orf25Q9BPX7 421 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 ELAC2Q9BQ52 826 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 TUBA1CQ9BQE3 449 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 EIF2AK1Q9BQI3 630 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 NUDT16L1Q9BRJ7 211 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 KATNAL1Q9BW62 490 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 CD93Q9NPY3 652 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 A1CFQ9NQ94 594 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 AASDHPPTQ9NRN7 309 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 ANKEF1Q9NU02 776 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 BLOC1S4Q9NUP1 217 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 PPP1R14DQ9NXH3 145 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 SAGE1Q9NXZ1 904 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 TRPM5Q9NZQ8 1165 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 MTRRQ9UBK8 725 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 TMX2Q9Y320 296 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 POLR2AP24928 1970 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 ATRNL1Q5VV63 1379 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 LRRC72A6NJI9 287 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 LACTBL1A8MY62 500 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 TTC34A8MYJ7 566 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 RNASET2O00584 256 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 CETN3O15182 167 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 ZBTB43O43298 467 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 RTN3O95197 1032 aaPredicted RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 IL33O95760 270 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 PARP1P09874 1014 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 IFIT1P09914 478 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 OSMP13725 252 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 TRIM27P14373 513 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 GSPT1P15170 499 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 ALOX15P16050 662 aaPredicted RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 AGXTP21549 392 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 MUTP22033 750 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 RPS6KB1P23443 525 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 SERPINB3P29508 390 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 PRKAR1BP31321 381 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 SREBF1P36956 1147 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CD86P42081 329 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 MAGEA9P43362 315 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CLCN2P51788 898 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CLRN1P58418 232 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 NHLH2Q02577 135 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 FSTL1Q12841 308 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 ELF2Q15723 593 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 GEN1Q17RS7 908 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 ANKDD1AQ495B1 522 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 Q4G0T1 1027 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 TIGD2Q4W5G0 525 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 HECTD3Q5T447 861 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 METTL11BQ5VVY1 283 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 THOC7Q6I9Y2 204 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 C1orf228Q6PIY5 440 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CNSTQ6PJW8 725 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CORO6Q6QEF8 472 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 SYT12Q8IV01 421 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 PQLC1Q8N2U9 271 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 TXLNBQ8N3L3 684 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 NAXEQ8NCW5 288 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CCDC150Q8NCX0 1101 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 GCC1Q96CN9 775 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 MYEOVQ96EZ4 313 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CYFIP2Q96F07 1278 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 TRIM5Q9C035 493 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 PARVGQ9HBI0 331 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 LANCL2Q9NS86 450 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 HPF1Q9NWY4 346 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 MOCS1Q9NZB8 636 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 GRID1Q9ULK0 1009 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 NOB1Q9ULX3 412 aaKnown RBP5.48□□□□□ -1.53
VPS35-205ENST00000563984 TMED5Q9Y3A6 229 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 CHST2Q9Y4C5 530 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 PCDHGA2Q9Y5H1 932 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 GPR45Q9Y5Y3 372 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 HS3ST4Q9Y661 456 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 SLC4A4Q9Y6R1 1079 aa5.48□□□□□ -1.53
VPS35-205ENST00000563984 ERCC6Q03468 1493 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ROCK1Q13464 1354 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CLRN2A0PK11 232 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 A8MVJ9 347 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 FAM171A2A8MVW0 826 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CXorf49A8MYA2 514 aaPredicted RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms